added Jaeger 22 samples #981
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ancientMetagenomeDirCheck, version 1.3 Ancient Metagenome Host Associated SamplesChecking Ancient Single Genome Host Associated SamplesChecking Ancient Metagenome Environmental SamplesChecking Ancient Metagenome Host Associated LibrariesChecking Ancient Single Genome Host Associated LibrariesChecking Ancient Metagenome Environmental LibrariesChecking |
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Need to update changelog once new structure in place |
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James to check why libraries table broken once release is done |
ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv
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…me-hostassociated_libraries.tsv Co-authored-by: James A. Fellows Yates <[email protected]>
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ancientMetagenomeDirCheck, version 1.3 Ancient Metagenome Host Associated SamplesChecking Ancient Single Genome Host Associated SamplesChecking Ancient Metagenome Environmental SamplesChecking Ancient Metagenome Host Associated LibrariesChecking Ancient Single Genome Host Associated LibrariesChecking Ancient Metagenome Environmental LibrariesChecking |
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Attempting again to commit suggestions and making pull request for correction. Not entirely sure about which boxed to tick. |
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ancientMetagenomeDirCheck, version 1.3 Ancient Metagenome Host Associated SamplesChecking Ancient Single Genome Host Associated SamplesChecking Ancient Metagenome Environmental SamplesChecking Ancient Metagenome Host Associated LibrariesChecking Ancient Single Genome Host Associated LibrariesChecking Ancient Metagenome Environmental LibrariesChecking |
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ancientMetagenomeDirCheck, version 1.3 Ancient Metagenome Host Associated SamplesChecking Ancient Single Genome Host Associated SamplesChecking Ancient Metagenome Environmental SamplesChecking Ancient Metagenome Host Associated LibrariesChecking Ancient Single Genome Host Associated LibrariesChecking Ancient Metagenome Environmental LibrariesChecking |
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The SRR numbers are duplicated across the two libraries, body210_B should be: SRR17499018 (the URLs are correct though :))
I also make a suggestion which I forgot about which is the URL formatting (we don't keep the ftp://.
And finally - the one thing we didn't get around to talking about is the CHANGELOG, where we record each new publication. You will need to update this to under the unreleased section, then the header and subsection: added, single-genome asscociated (look at the previous releases for examples).
| Jager2022 2022 10.1016/j.tube.2022.102181 body_210 SRA PRJNA795622 SRS11554883 body210_A double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq X PAIRED WGS 58414020 SRR17499019 fastq_all ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/019/SRR17499019/SRR17499019_1.fastq.gz;ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/019/SRR17499019/SRR17499019_2.fastq.gz 64c07f9194159d6ac459cb1d89e3032d;3dc6ad3a84132fff1013c008cc52da31 3941440515;3753166391 | ||
| Jager2022 2022 10.1016/j.tube.2022.102181 body_210 SRA PRJNA795622 SRS11554883 body210_B double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq X PAIRED WGS 9768947 SRR17499019 fastq_all ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/018/SRR17499018/SRR17499018_1.fastq.gz;ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/018/SRR17499018/SRR17499018_2.fastq.gz 5f9ad49d7787d1857b096dc6a27e1380;2a66ad5a28fe0f553c6a4b8e865e0e6e 654630901;627204826 |
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| Jager2022 2022 10.1016/j.tube.2022.102181 body_210 SRA PRJNA795622 SRS11554883 body210_A double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq X PAIRED WGS 58414020 SRR17499019 fastq_all ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/019/SRR17499019/SRR17499019_1.fastq.gz;ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/019/SRR17499019/SRR17499019_2.fastq.gz 64c07f9194159d6ac459cb1d89e3032d;3dc6ad3a84132fff1013c008cc52da31 3941440515;3753166391 | |
| Jager2022 2022 10.1016/j.tube.2022.102181 body_210 SRA PRJNA795622 SRS11554883 body210_B double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq X PAIRED WGS 9768947 SRR17499019 fastq_all ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/018/SRR17499018/SRR17499018_1.fastq.gz;ftp://ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/018/SRR17499018/SRR17499018_2.fastq.gz 5f9ad49d7787d1857b096dc6a27e1380;2a66ad5a28fe0f553c6a4b8e865e0e6e 654630901;627204826 | |
| Jager2022 2022 10.1016/j.tube.2022.102181 body_210 SRA PRJNA795622 SRS11554883 body210_A double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq X PAIRED WGS 58414020 SRR17499019 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/019/SRR17499019/SRR17499019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/019/SRR17499019/SRR17499019_2.fastq.gz 64c07f9194159d6ac459cb1d89e3032d;3dc6ad3a84132fff1013c008cc52da31 3941440515;3753166391 | |
| Jager2022 2022 10.1016/j.tube.2022.102181 body_210 SRA PRJNA795622 SRS11554883 body210_B double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq X PAIRED WGS 9768947 SRR17499018 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/018/SRR17499018/SRR17499018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/018/SRR17499018/SRR17499018_2.fastq.gz 5f9ad49d7787d1857b096dc6a27e1380;2a66ad5a28fe0f553c6a4b8e865e0e6e 654630901;627204826 |
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ancientMetagenomeDirCheck, version 1.3 Ancient Metagenome Host Associated SamplesChecking Ancient Single Genome Host Associated SamplesChecking Ancient Metagenome Environmental SamplesChecking Ancient Metagenome Host Associated LibrariesChecking Ancient Single Genome Host Associated LibrariesChecking Ancient Metagenome Environmental LibrariesChecking |
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ancientMetagenomeDirCheck, version 1.3 Ancient Metagenome Host Associated SamplesChecking Ancient Single Genome Host Associated SamplesChecking Ancient Metagenome Environmental SamplesChecking Ancient Metagenome Host Associated LibrariesChecking Ancient Single Genome Host Associated LibrariesChecking Ancient Metagenome Environmental LibrariesChecking |
committing suggestions, not done yet with all
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ancientMetagenomeDirCheck, version 1.3 Ancient Metagenome Host Associated SamplesChecking Ancient Single Genome Host Associated SamplesChecking Ancient Metagenome Environmental SamplesChecking Ancient Metagenome Host Associated LibrariesChecking Ancient Single Genome Host Associated LibrariesChecking Ancient Metagenome Environmental LibrariesChecking |
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Corrected the entries. Now trying to understand the CHANGELOG |
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ancientMetagenomeDirCheck, version 1.3 Ancient Metagenome Host Associated SamplesChecking Ancient Single Genome Host Associated SamplesChecking Ancient Metagenome Environmental SamplesChecking Ancient Metagenome Host Associated LibrariesChecking Ancient Single Genome Host Associated LibrariesChecking Ancient Metagenome Environmental LibrariesChecking |
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ancientMetagenomeDirCheck, version 1.3 Ancient Metagenome Host Associated SamplesChecking Ancient Single Genome Host Associated SamplesChecking Ancient Metagenome Environmental SamplesChecking Ancient Metagenome Host Associated LibrariesChecking Ancient Single Genome Host Associated LibrariesChecking Ancient Metagenome Environmental LibrariesChecking |
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ancientMetagenomeDirCheck, version 1.3 Ancient Metagenome Host Associated SamplesChecking Ancient Single Genome Host Associated SamplesChecking Ancient Metagenome Environmental SamplesChecking Ancient Metagenome Host Associated LibrariesChecking Ancient Single Genome Host Associated LibrariesChecking Ancient Metagenome Environmental LibrariesChecking |
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ancientMetagenomeDirCheck, version 1.3 Ancient Metagenome Host Associated SamplesChecking Ancient Single Genome Host Associated SamplesChecking Ancient Metagenome Environmental SamplesChecking Ancient Metagenome Host Associated LibrariesChecking Ancient Single Genome Host Associated LibrariesChecking Ancient Metagenome Environmental LibrariesChecking |
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10.1016/j.tube.2022.102181
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