Merge pull request #981 from SPAAM-community/jaeger2022

added Jaeger 22 samples

Author: jfy133

CHANGELOG.md

@@ -13,6 +13,8 @@ and this project follows to [Calendar Versioning](https://calver.org/).
 
 #### Ancient Single Genome: Host Associated
 
+- Jäger 2022 10.1016/j.tube.2022.102181
+
 #### Ancient Metagenome: Environmental
 
 #### Ancient Metagenome: Anthropogenic

ancientsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv

@@ -2095,3 +2095,5 @@ Duggan2020	2020	10.1186/s13059-020-02079-z	VK05	SRA	PRJNA561155	SRS5298895	DVK05
 Duggan2020	2020	10.1186/s13059-020-02079-z	VK08	SRA	PRJNA561155	SRS5298894	SVK08_2017-07	single	KAPA SYBR FAST DNA	none	Illumina MiSeq	PAIRED	WGS	1341471	SRR10010584	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/SRR100/084/SRR10010584/SRR10010584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR100/084/SRR10010584/SRR10010584_2.fastq.gz	d55052c8ae6a2e219596ed216f1d81f3;b41d36f87c8233eb5095f0df03747087	47807296;46331297
 Duggan2020	2020	10.1186/s13059-020-02079-z	VK08	SRA	PRJNA561155	SRS5298894	DVK08_2017-08ds	double	KAPA SYBR FAST DNA	none	Illumina HiSeq 1500	PAIRED	WGS	614274	SRR10010585	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/SRR100/085/SRR10010585/SRR10010585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR100/085/SRR10010585/SRR10010585_2.fastq.gz	8fbcdec363b781374defd10fba65bf0f;f5ae7359f7d4741b57ba4e47fb1a34ea	30656133;34004397
 Duggan2020	2020	10.1186/s13059-020-02079-z	VK12	SRA	PRJNA561155	SRS5298893	DVK12_2019-01	double	KAPA SYBR FAST DNA	none	Illumina HiSeq 1500	PAIRED	WGS	2912644	SRR10010586	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/SRR100/086/SRR10010586/SRR10010586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR100/086/SRR10010586/SRR10010586_2.fastq.gz	abbc9e2294d5a307e4916b4b4ada3e68;e2fbedcc7f4ed926c0f334fb97a05ef0	157768389;167668299
+Jager2022	2022	10.1016/j.tube.2022.102181	body_210	SRA	PRJNA795622	SRS11554883	body210_A	double	Phusion Hot Start High-Fidelity DNA	none	Illumina HiSeq X	PAIRED	WGS	58414020	SRR17499019	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/019/SRR17499019/SRR17499019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/019/SRR17499019/SRR17499019_2.fastq.gz	64c07f9194159d6ac459cb1d89e3032d;3dc6ad3a84132fff1013c008cc52da31	3941440515;3753166391
+Jager2022	2022	10.1016/j.tube.2022.102181	body_210	SRA	PRJNA795622	SRS11554883	body210_B	double	Phusion Hot Start High-Fidelity DNA	none	Illumina HiSeq X	PAIRED	WGS	9768947	SRR17499018	fastq_all	ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/018/SRR17499018/SRR17499018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/018/SRR17499018/SRR17499018_2.fastq.gz	5f9ad49d7787d1857b096dc6a27e1380;2a66ad5a28fe0f553c6a4b8e865e0e6e	654630901;627204826

ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv

@@ -532,3 +532,4 @@ Pfrengle2021	2021	10.1186/s12915-021-01120-2	Hospital of Sant Llàtzer / Santa M
 Pfrengle2021	2021	10.1186/s12915-021-01120-2	Hospital of Sant Llàtzer / Santa Margarida, Barcelona	41.38	2.16	Spain	UF8	Homo sapiens	400	10.1186/s12915-021-01120-2	bacteria	Mycobacterium leprae	tissue	chromosome	SRA	raw	PRJNA721828	SRS9826012,SRS9826013
 Pfrengle2021	2021	10.1186/s12915-021-01120-2	Hospital of Sant Llàtzer / Santa Margarida, Barcelona	41.38	2.16	Spain	UF800	Homo sapiens	800	10.1186/s12915-021-01120-2	bacteria	Mycobacterium leprae	bone	chromosome	SRA	raw	PRJNA721828	SRS9826024,SRS9825995
 Pfrengle2021	2021	10.1186/s12915-021-01120-2	Hospital of Sant Llàtzer / Santa Margarida, Barcelona	41.38	2.16	Spain	UF803	Homo sapiens	900	10.1186/s12915-021-01120-2	bacteria	Mycobacterium leprae	tissue	chromosome	SRA	raw	PRJNA721828	SRS9826029,SRS9826030
+Jager2022	2022	10.1016/j.tube.2022.102181	Dominican church of Vác	47.777	19.127	Hungary	body_210	Homo sapiens	200	10.1016/j.tube.2022.102181	bacteria	Mycobacterium tuberculosis	bone	chromosome	SRA	raw	PRJNA795622	SRS11554883