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Merged
merged 10 commits into from
Sep 5, 2022
Merged

added Jaeger 22 samples #981

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f35de81
added Jaeger 22 samples
DianaSpurite Aug 29, 2022
59830d0
Added Jaeger 2022 libraries
DianaSpurite Aug 29, 2022
c947628
Update ancientsinglegenome-hostassociated/libraries/ancientsinglegeno…
DianaSpurite Sep 5, 2022
c2da903
Merge remote-tracking branch 'origin/dev' into jaeger2022
jfy133 Sep 5, 2022
f6e5ca2
Merge remote-tracking branch 'origin/master' into jaeger2022
jfy133 Sep 5, 2022
266f725
Update ancientsinglegenome-hostassociated_libraries.tsv
DianaSpurite Sep 5, 2022
157fc8b
Update ancientsinglegenome-hostassociated_libraries.tsv
DianaSpurite Sep 5, 2022
21c747a
Update CHANGELOG.md
DianaSpurite Sep 5, 2022
4d11bda
Update CHANGELOG.md
DianaSpurite Sep 5, 2022
50b8010
Update CHANGELOG.md
jfy133 Sep 5, 2022
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2 changes: 2 additions & 0 deletions CHANGELOG.md
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Expand Up @@ -13,6 +13,8 @@ and this project follows to [Calendar Versioning](https://calver.org/).

#### Ancient Single Genome: Host Associated

- Jäger 2022 10.1016/j.tube.2022.102181

#### Ancient Metagenome: Environmental

#### Ancient Metagenome: Anthropogenic
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2 changes: 2 additions & 0 deletions ...entsinglegenome-hostassociated/libraries/ancientsinglegenome-hostassociated_libraries.tsv
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Expand Up @@ -2095,3 +2095,5 @@ Duggan2020 2020 10.1186/s13059-020-02079-z VK05 SRA PRJNA561155 SRS5298895 DVK05
Duggan2020 2020 10.1186/s13059-020-02079-z VK08 SRA PRJNA561155 SRS5298894 SVK08_2017-07 single KAPA SYBR FAST DNA none Illumina MiSeq PAIRED WGS 1341471 SRR10010584 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR100/084/SRR10010584/SRR10010584_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR100/084/SRR10010584/SRR10010584_2.fastq.gz d55052c8ae6a2e219596ed216f1d81f3;b41d36f87c8233eb5095f0df03747087 47807296;46331297
Duggan2020 2020 10.1186/s13059-020-02079-z VK08 SRA PRJNA561155 SRS5298894 DVK08_2017-08ds double KAPA SYBR FAST DNA none Illumina HiSeq 1500 PAIRED WGS 614274 SRR10010585 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR100/085/SRR10010585/SRR10010585_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR100/085/SRR10010585/SRR10010585_2.fastq.gz 8fbcdec363b781374defd10fba65bf0f;f5ae7359f7d4741b57ba4e47fb1a34ea 30656133;34004397
Duggan2020 2020 10.1186/s13059-020-02079-z VK12 SRA PRJNA561155 SRS5298893 DVK12_2019-01 double KAPA SYBR FAST DNA none Illumina HiSeq 1500 PAIRED WGS 2912644 SRR10010586 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR100/086/SRR10010586/SRR10010586_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR100/086/SRR10010586/SRR10010586_2.fastq.gz abbc9e2294d5a307e4916b4b4ada3e68;e2fbedcc7f4ed926c0f334fb97a05ef0 157768389;167668299
Jager2022 2022 10.1016/j.tube.2022.102181 body_210 SRA PRJNA795622 SRS11554883 body210_A double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq X PAIRED WGS 58414020 SRR17499019 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/019/SRR17499019/SRR17499019_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/019/SRR17499019/SRR17499019_2.fastq.gz 64c07f9194159d6ac459cb1d89e3032d;3dc6ad3a84132fff1013c008cc52da31 3941440515;3753166391
Jager2022 2022 10.1016/j.tube.2022.102181 body_210 SRA PRJNA795622 SRS11554883 body210_B double Phusion Hot Start High-Fidelity DNA none Illumina HiSeq X PAIRED WGS 9768947 SRR17499018 fastq_all ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/018/SRR17499018/SRR17499018_1.fastq.gz;ftp.sra.ebi.ac.uk/vol1/fastq/SRR174/018/SRR17499018/SRR17499018_2.fastq.gz 5f9ad49d7787d1857b096dc6a27e1380;2a66ad5a28fe0f553c6a4b8e865e0e6e 654630901;627204826
1 change: 1 addition & 0 deletions ancientsinglegenome-hostassociated/samples/ancientsinglegenome-hostassociated_samples.tsv
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Expand Up @@ -532,3 +532,4 @@ Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa M
Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa Margarida, Barcelona 41.38 2.16 Spain UF8 Homo sapiens 400 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tissue chromosome SRA raw PRJNA721828 SRS9826012,SRS9826013
Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa Margarida, Barcelona 41.38 2.16 Spain UF800 Homo sapiens 800 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae bone chromosome SRA raw PRJNA721828 SRS9826024,SRS9825995
Pfrengle2021 2021 10.1186/s12915-021-01120-2 Hospital of Sant Llàtzer / Santa Margarida, Barcelona 41.38 2.16 Spain UF803 Homo sapiens 900 10.1186/s12915-021-01120-2 bacteria Mycobacterium leprae tissue chromosome SRA raw PRJNA721828 SRS9826029,SRS9826030
Jager2022 2022 10.1016/j.tube.2022.102181 Dominican church of Vác 47.777 19.127 Hungary body_210 Homo sapiens 200 10.1016/j.tube.2022.102181 bacteria Mycobacterium tuberculosis bone chromosome SRA raw PRJNA795622 SRS11554883