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Issues list

Create util script to convert the NBAtlas cell type metadata analysis
#1175 opened Jun 16, 2025 by sjspielman
@sjspielman
Create test version of NBAtlas cell type metadata analysis
#1174 opened Jun 16, 2025 by sjspielman
@sjspielman
Add exploratory notebook for SingleR results on NB samples analysis
#1172 opened Jun 12, 2025 by sjspielman
@sjspielman
Add list of marker genes to validate NB annotations analysis
#1171 opened Jun 12, 2025 by sjspielman
@sjspielman
1
Run SingleR with both NBAtlas reference options
#1168 opened Jun 9, 2025 by sjspielman
@sjspielman
Add script to run SingleR on NB samples analysis
#1167 opened Jun 9, 2025 by sjspielman
@sjspielman
Create SingleR trained model from NBAtlas analysis
#1166 opened Jun 9, 2025 by sjspielman
@sjspielman
2
Add script to reformat NBAtlas object analysis
#1165 opened Jun 9, 2025 by sjspielman
1
@sjspielman
3
Add a gene order file with chromosome arms analysis
#1163 opened Jun 5, 2025 by sjspielman
@sjspielman
Add function to create total CNV column analysis
#1157 opened Jun 3, 2025 by sjspielman
@sjspielman
Use CNV distributions to identify additional Ewings tumor cells
#1156 opened Jun 3, 2025 by sjspielman
Confirm label transfer approach for neuroblastoma
#1152 opened Jun 2, 2025 by sjspielman
@sjspielman
2
Annotate neuroblastoma cell types using NBAtlas Epic
#1151 opened Jun 2, 2025 by sjspielman
Run inferCNV on neuroblastoma samples analysis
#1148 opened Jun 2, 2025 by sjspielman
@sjspielman
Add script to create normal references for neuroblastoma analysis
#1147 opened Jun 2, 2025 by sjspielman
1
@sjspielman
Neuroblastoma: Explore use of pooled normal reference with inferCNV Epic
#1143 opened Jun 2, 2025 by sjspielman
Add wrapper function for running internal references analysis
#1130 opened May 15, 2025 by sjspielman
Pilocytic Astrocytoma scRNA Analysis analysis
#1121 opened May 7, 2025 by ShashTrip1
Docs request: Centralized documentation for available results OpenScPCA admin Issue for an OpenScPCA maintainer
#1119 opened May 6, 2025 by sjspielman
Explore cells that are classified as both immune and tumor in Ewing samples analysis
#1087 opened Mar 20, 2025 by allyhawkins
@allyhawkins
Fix mkdocs discrepancy
#995 opened Jan 17, 2025 by sjspielman
@sjspielman
4
Bug report: Zellkonverter/Basilisk initialization in Docker images doesn't work with rstudio users bug Something isn't working
#972 opened Jan 3, 2025 by jashapiro
Analysis module failing in CI ci OpenScPCA admin Issue for an OpenScPCA maintainer
#967 opened Dec 22, 2024 by github-actions bot
1
Consider using a converted Seurat object in hello-clusters
#957 opened Dec 20, 2024 by sjspielman
@sjspielman
1
Docs request: "Quick start" guide for technical setup
#948 opened Dec 17, 2024 by sjspielman
1
ProTip! Exclude everything labeled bug with -label:bug.