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Pull requests: snakemake/snakemake-wrappers

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31 Open 4,084 Closed
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Pull requests list

perf: autobump bio/tabix/index bio/tabix/index
#4252 opened Jun 6, 2025 by snakedeploy-bot bot Loading…
1
perf: autobump bio/igv-reports bio/igv-reports
#4214 opened Jun 6, 2025 by snakedeploy-bot bot Loading…
1
feat: Add wrapper for Tandem Repeat Finder (TRF) utility
#4160 opened Jun 2, 2025 by rohan-ibn-tariq Loading…
6 of 7 tasks
33
feat: Pyfaidx
#4159 opened Jun 2, 2025 by tdayris Loading…
7 tasks done
6
fix!: remove parallel gzip, merge wrappers, added docs, and code refactoring.
#4158 opened May 30, 2025 by fgvieira Loading…
7 tasks done
1
8
fix: GATK variantrecalibrator wrapper path
#4126 opened May 20, 2025 by fgvieira Loading…
7 tasks done
1
1
chore(master): release 6.3.0 autorelease: pending
#4124 opened May 19, 2025 by snakemake-bot Loading…
1
feat: add param for mem_overhead
#4122 opened May 16, 2025 by fgvieira Loading…
7 tasks done
4
perf: autobump bio/pyfastaq/replace_bases bio/pyfastaq/replace_bases
#4000 opened Apr 11, 2025 by snakedeploy-bot bot Loading…
2
feat: Add mmseqs2 main workflows
#3981 opened Apr 4, 2025 by fgvieira • Draft
7 tasks done
1
fix: bug when rescaling BAM
#3687 opened Mar 4, 2025 by fgvieira • Draft
7 tasks done
1
2
perf: autobump bio/ngscheckmate/ncm bio/ngscheckmate/ncm
#3542 opened Dec 13, 2024 by snakedeploy-bot bot Loading…
2
feat: bowtie2 can now sort with samtools and picard
#3518 opened Dec 3, 2024 by jlanga Loading…
7 tasks done
42
perf: autobump bio/rubic bio/rubic
#3364 opened Oct 25, 2024 by snakedeploy-bot bot Loading…
1
feat: added wrapper for Paraphase Stale
#3071 opened Jul 15, 2024 by MagdalenaZZ Loading…
1 task done
@fgvieira
75
feat: Add a wrapper for quarto markdown rendering
#3003 opened Jun 20, 2024 by votti Loading…
1 task done
32
feat: ensembl reference collections
#2977 opened Jun 3, 2024 by mauripops Loading…
1 task done
12
feat: Add configurable protocol support to ensembl reference download
#2649 opened Feb 15, 2024 by pettyalex Loading…
1 task done
12
feat: add Orthanq wrappers for hla and virus applications
#2640 opened Feb 4, 2024 by huzuner Loading…
1 task
18
feat: add wrapper for metaDMG Stale
#1809 opened Sep 19, 2023 by fgvieira • Draft
1 task done
1
feat: add ngsngs wrapper Stale
#1808 opened Sep 19, 2023 by fgvieira • Draft
1 task done
1
feat: new inphared-db wrapper
#1550 opened Jul 20, 2023 by nacnoriko Loading…
1 task
18
feat: add wrapper for rbt vcf_fix_iupac_alleles
#1209 opened Apr 5, 2023 by fgvieira Loading…
1 task done
8
fix: Allow concurrent and large refgenie downloads
#1172 opened Mar 28, 2023 by Austin-s-h Loading…
1 task done
13
perf: autobump bio/trimmomatic/se bio/trimmomatic/se
#869 opened Nov 11, 2022 by snakedeploy-bot bot Loading…
1
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