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21 Open 122 Closed
21 Open 122 Closed
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Issues list

GATK VARIANTRECALIBRATOR wrapper is missing the snakemake-wrappers' version bug Something isn't working
#4125 opened May 19, 2025 by TriLab-bioinf
1
Cell Ranger wrapper enhancement New feature or request
#4104 opened May 12, 2025 by mschecht
3
Use old snakemake wrappers with nodefaults instead of defaults in the yaml file enhancement New feature or request
#4103 opened May 9, 2025 by gernophil
Wrapper download fails due to incorrect GitHub path: mismatch between requested and actual wrapper URL bug Something isn't working
#4046 opened Apr 30, 2025 by bol7asan
1
generic snakemake-wrapper-utils mechanism to move files at the end of a wrapper run, to work around tool-defined filenames enhancement New feature or request
#3976 opened Apr 1, 2025 by dlaehnemann
Custom meta-wrappers enhancement New feature or request
#3141 opened Aug 27, 2024 by t-silvers
3
adding a cff file for citing the project enhancement New feature or request question Further information is requested
#2935 opened May 13, 2024 by cmeesters
1
security considerations for wrapper retrieval question Further information is requested
#478 opened Apr 24, 2022 by FliesLikeABrick
@johanneskoester
3
vep download cache vs vep annotate bug Something isn't working Stale
#365 opened May 24, 2021 by lczech
4
Varscan/Snpeff wrappers are incompatible - please add warning to documentation bug Something isn't working Stale
#275 opened Dec 3, 2020 by moldach
3
Problem with the VEP ANNOTATE snakemake wrapper bug Something isn't working
#167 opened Aug 31, 2020 by moldach
1
Error occurred during initialization of VM java/lang/NoClassDefFoundError: java/lang/Object bug Something isn't working
#164 opened Aug 26, 2020 by moldach
2
Add a joint-wrapper which parallelizes SAMTOOLS MPILEUP/VARSCAN MPILEUP2SNP enhancement New feature or request
#163 opened Aug 25, 2020 by moldach
7
Options for wrappers
#154 opened Aug 14, 2020 by vsoch
@johanneskoester
1
Modularity of wrappers?
#150 opened Jul 30, 2020 by vsoch
Format with snakefmt
#146 opened Jul 23, 2020 by mbhall88
use resources: mem_gb=3 specs in all Java tools to request -Xmx{snakemake.resources.mem_gb}G enhancement New feature or request
#127 opened Jun 25, 2020 by dlaehnemann
@christopher-schroeder
4
Picard Createsequencedictionary bug Something isn't working
#99 opened May 12, 2020 by RaphaelHablesreiter
1
Display shell command when -p is given. bug Something isn't working
#78 opened Mar 20, 2020 by daynefiler
1
bwa index and mem potential path bugs bug Something isn't working
#60 opened Feb 19, 2020 by vsoch
2
Container recipe for wrappers enhancement New feature or request
#57 opened Feb 10, 2020 by mbhall88
18
ProTip! Exclude everything labeled bug with -label:bug.