New module: mobster #8647
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New module: mobster #8647
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itrujnara
reviewed
Jun 16, 2025
| label "process_high" | ||
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| conda "${moduleDir}/environment.yml" | ||
| container "${ workflow.containerEngine == 'singularity' && !task.ext.singularity_pull_docker_container ? |
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Can you make a Seqera container with the tools? They are more reliable than Biocontainers
| tuple val(meta), path(rds_join) | ||
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| output: | ||
| tuple val(meta), path("*_mobster_st_fit.rds") , emit: mobster_rds |
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Please fix Harshil alignment
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| cat <<-END_VERSIONS > versions.yml | ||
| "${task.process}": | ||
| CNAqc: \$(Rscript -e 'library(CNAqc); sessionInfo()\$otherPkgs\$CNAqc\$Version') |
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Are these the only relevant versions?
| - rds_join: | ||
| type: file | ||
| description: Either a .rds object of class mCNAqc or a .csv mutations table | ||
| pattern: "*.{rds,csv}" |
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Can you check if there are EDAM ontology entries for the input and output files?
| tag "modules_nfcore" | ||
| tag "mobster" | ||
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| test("Should run without failures") { |
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Are there any alternative modes for this script? If not, no action needed
| assert process.success | ||
| } | ||
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| } |
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PR checklist
Closes #XXX
versions.ymlfile.labelnf-core modules test <MODULE> --profile dockernf-core modules test <MODULE> --profile singularitynf-core modules test <MODULE> --profile condanf-core subworkflows test <SUBWORKFLOW> --profile dockernf-core subworkflows test <SUBWORKFLOW> --profile singularitynf-core subworkflows test <SUBWORKFLOW> --profile conda