Add the deacon/index tool.

[mberacochea]

The container seems to have issues on apple silicon, so I tested this locally using conda.

PR checklist

• This comment contains a description of changes (with reason).
• If you've fixed a bug or added code that should be tested, add tests!
• If you've added a new tool - have you followed the module conventions in the contribution docs
• If necessary, include test data in your PR.
• Remove all TODO statements.
• Emit the versions.yml file.
• Follow the naming conventions.
• Follow the parameters requirements.
• Follow the input/output options guidelines.
• Add a resource label
• Use BioConda and BioContainers if possible to fulfil software requirements.
• Ensure that the test works with either Docker / Singularity. Conda CI tests can be quite flaky:
  • For modules:
    • nf-core modules test <MODULE> --profile docker -> tested using a custom container (I'll follow up with the devs - the bioconda container is not working on apple silicon -- I suspect it's related to how the package was compiled in bioconda)
    • nf-core modules test <MODULE> --profile singularity -> I don't have it locally (tricky to install on an M4)
    • nf-core modules test <MODULE> --profile conda
  • For subworkflows:
    • nf-core subworkflows test <SUBWORKFLOW> --profile docker
    • nf-core subworkflows test <SUBWORKFLOW> --profile singularity
    • nf-core subworkflows test <SUBWORKFLOW> --profile conda

[jfy133]

Overall look good :)

[jfy133]

This should not be modified (should remain meta.id) unless there is a spceific reason you did this?

[mberacochea]

not really, I was just tinkering with that I forgot to flip back

[mberacochea]

Corrected - dcbb35e

[vagkaratzas]

Nice, just a minor comment