Bundle support for FeatureInputs, references; add CreateBundle tool. #5445

Job	Run time
check if the environment has privileges	3s
build and push gatk docker to artifacts	12m 16s
Validate generated WDLs using womtools	17m 24s
WDL test RUN_CNV_GERMLINE_COHORT_WDL on cromwell	24m 19s
WDL test RUN_CNV_GERMLINE_CASE_WDL on cromwell	25m 12s
WDL test RUN_CNV_SOMATIC_WDL on cromwell	25m 8s
WDL test RUN_VCF_SITE_LEVEL_FILTERING_WDL on cromwell	12m 45s
Validate script WDLs using womtools	1m 7s
WDL test RUN_M2_WDL on cromwell	16m 59s
integration build and test Java 17.0.6+10	29m 2s
cloud build and test Java 17.0.6+10	19m 42s
unit build and test Java 17.0.6+10	18m 7s
variantcalling test on docker Java 17.0.6+10	26m 47s
integration test on docker Java 17.0.6+10	31m 27s
unit test on docker Java 17.0.6+10	19m 1s
conda test on docker Java 17.0.6+10	25m 19s
	5h 4m 38s

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