remove top-level pandera __init__ import warning #3633
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| name: CI Tests | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - dev | |
| - bugfix | |
| - "release/*" | |
| pull_request: | |
| branches: | |
| - main | |
| - dev | |
| - ibis-dev | |
| - bugfix | |
| - "release/*" | |
| env: | |
| DEFAULT_PYTHON: 3.11 | |
| CI: "true" | |
| concurrency: | |
| group: '${{ github.workflow }} @ ${{ github.event.pull_request.head.label || github.head_ref || github.ref }}' | |
| cancel-in-progress: true | |
| jobs: | |
| lint: | |
| name: Linters (${{ matrix.python-version }}) | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/pip # ubuntu location | |
| key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install 'uv<0.7.0' nox pre_commit \ | |
| mypy==0.982 \ | |
| types-click \ | |
| types-pytz \ | |
| types-pyyaml \ | |
| types-requests \ | |
| types-setuptools \ | |
| setuptools \ | |
| polars | |
| - name: Install pandera | |
| run: python -m pip install -e . | |
| - name: Pip info | |
| run: python -m pip list | |
| - name: Testing | |
| run: which uv | |
| - name: Testing 2 | |
| run: which nox | |
| - name: Check requirements | |
| run: nox -db uv -r --non-interactive --python ${{ matrix.python-version }} --session requirements-${{ matrix.python-version }} | |
| - name: Sort Imports | |
| run: pre-commit run isort --all-files | |
| - name: Black | |
| if: always() | |
| run: pre-commit run black --all-files | |
| - name: Pylint | |
| if: always() | |
| run: pre-commit run pylint --all-files | |
| - name: Mypy Type Checking | |
| if: always() | |
| run: pre-commit run mypy --all-files | |
| # test base functionality | |
| unit-tests-base: | |
| name: > | |
| Unit Tests Base: python-${{ matrix.python-version }} ${{ matrix.os }} (pydantic-${{ matrix.pydantic-version }}) | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: pwsh | |
| env: | |
| PYTHONUTF8: 1 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] | |
| pydantic-version: ["2.10.6"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dev deps | |
| shell: bash | |
| run: pip install 'uv<0.7.0' nox | |
| - run: | | |
| pip list | |
| printenv | sort | |
| - name: Unit Tests Base | |
| run: nox -v -db uv --non-interactive --session "tests-${{ matrix.python-version }}(extra=None, pandas=None, pydantic=None)" | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| # test pandas functionality | |
| unit-tests-pandas: | |
| name: > | |
| Unit Tests Pandas: python-${{ matrix.python-version }} ${{ matrix.os }} (extra-pandas, pandas-${{ matrix.pandas-version }}, pydantic-${{ matrix.pydantic-version }}) | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: pwsh | |
| env: | |
| PYTHONUTF8: 1 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] | |
| pandas-version: ["2.1.1", "2.2.3"] | |
| pydantic-version: ["1.10.11", "2.10.6"] | |
| exclude: | |
| - pandas-version: "2.1.1" | |
| python-version: "3.13" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dev deps | |
| shell: bash | |
| run: pip install 'uv<0.7.0' nox | |
| - run: | | |
| pip list | |
| printenv | sort | |
| - name: Unit Tests - pandas | |
| run: nox -v -db uv --non-interactive --session "tests-${{ matrix.python-version }}(extra='pandas', pandas='${{ matrix.pandas-version }}', pydantic='${{ matrix.pydantic-version }}')" | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| # test extras that add functionality to core pandera features | |
| unit-tests-supplemental-extras: | |
| name: > | |
| Unit Tests Supplemental Extras: python-${{ matrix.python-version }} ${{ matrix.os }} (extra-${{ matrix.extra }}, pandas-${{ matrix.pandas-version }}, pydantic-${{ matrix.pydantic-version }}) | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: pwsh | |
| env: | |
| PYTHONUTF8: 1 | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] | |
| pandas-version: ["2.2.3"] | |
| pydantic-version: ["2.10.6"] | |
| extra: | |
| - hypotheses | |
| - io | |
| - mypy | |
| - strategies | |
| - fastapi | |
| - geopandas | |
| exclude: | |
| - extra: mypy | |
| os: windows-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dev deps | |
| shell: bash | |
| run: pip install 'uv<0.7.0' nox | |
| - run: | | |
| pip list | |
| printenv | sort | |
| - name: Unit Tests - ${{ matrix.extra }} | |
| run: nox -v -db uv --non-interactive --session "tests-${{ matrix.python-version }}(extra='${{ matrix.extra }}', pandas='${{ matrix.pandas-version }}', pydantic='${{ matrix.pydantic-version }}')" | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| # test extras for popular dataframe libraries | |
| unit-tests-dataframe-extras: | |
| name: > | |
| Unit Tests DataFrame Extras: python-${{ matrix.python-version }} ${{ matrix.os }} (extra-${{ matrix.extra }}, pandas-${{ matrix.pandas-version }}, pydantic-${{ matrix.pydantic-version }}) | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: pwsh | |
| env: | |
| PYTHONUTF8: 1 | |
| PYTEST_FLAGS: --cov=pandera --cov-report=term-missing --cov-report=xml --cov-append | |
| HYPOTHESIS_FLAGS: -n=auto -q --hypothesis-profile=ci | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, windows-latest, macos-latest] | |
| python-version: ["3.9", "3.10", "3.11", "3.12", "3.13"] | |
| pandas-version: ["2.2.3"] | |
| pydantic-version: ["2.10.6"] | |
| extra: | |
| - dask | |
| - polars | |
| - pyspark | |
| - modin-dask | |
| - modin-ray | |
| - ibis | |
| exclude: | |
| # mypy tests hang on windows | |
| - extra: mypy | |
| os: windows-latest | |
| - extra: modin-ray | |
| os: windows-latest | |
| # pyspark serialization issue on windows: "pandas" module not found | |
| - extra: pyspark | |
| os: windows-latest | |
| - extra: pyspark | |
| python-version: "3.12" | |
| - extra: pyspark | |
| python-version: "3.13" | |
| - extra: modin-dask | |
| python-version: "3.13" | |
| - extra: modin-ray | |
| python-version: "3.13" | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-java@v4 | |
| with: | |
| distribution: "zulu" | |
| java-version: "17" | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Install dev deps | |
| shell: bash | |
| run: pip install 'uv<0.7.0' nox | |
| - run: | | |
| pip list | |
| printenv | sort | |
| - name: Unit Tests - ${{ matrix.extra }} | |
| run: nox -v -db uv --non-interactive --session "tests-${{ matrix.python-version }}(extra='${{ matrix.extra }}', pandas='${{ matrix.pandas-version }}', pydantic='${{ matrix.pydantic-version }}')" | |
| - name: Upload coverage to Codecov | |
| uses: codecov/codecov-action@v4 | |
| docs: | |
| name: Docs (${{ matrix.python-version }}) | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.9", "3.10", "3.11", "3.12"] | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-java@v4 | |
| with: | |
| distribution: "zulu" | |
| java-version: "17" | |
| - name: Set up Python ${{ matrix.python-version }} | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - uses: actions/cache@v4 | |
| with: | |
| path: ~/.cache/pip # ubuntu location | |
| key: ${{ runner.os }}-pip-${{ hashFiles('requirements-dev.txt') }} | |
| restore-keys: | | |
| ${{ runner.os }}-pip- | |
| - name: Install dependencies | |
| run: pip install 'uv<0.7.0' nox | |
| - name: Pip info | |
| run: python -m pip list | |
| - name: Build docs and run doctest | |
| run: > | |
| nox | |
| -db uv -r | |
| --non-interactive | |
| --session docs-${{ matrix.python-version }} |