A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)
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Updated
Jul 14, 2025 - Python
A python framework accelerating ML based discovery in the medical field by encouraging code reuse. Batteries included :)
A certificate transparency log keyword sniffer written in python
[Nature Machine Intelligence Journal] Official pytorch implementation for Uncertainty-Guided Dual-Views for Semi-Supervised Volumetric Medical Image Segmentation
💥 Command line tool for automatic liver parenchyma and liver vessel segmentation in CT using a pretrained deep learning model
[MICCAI 2024] All-In-One Medical Image Restoration via Task-Adaptive Routing (AMIR).
Repository for the Universal Lesion Segmentation Challenge '23
Python package for tomographic data processing and reconstruction
[ECCV 2024] Brain-ID: Learning Contrast-agnostic Anatomical Representations for Brain Imaging
A Cascade Transformer-based Model for 3D Dose Distribution Prediction in Head and Neck Cancer Radiotherapy
A deep learning-based fully-automatic intravenous contrast detection tool for head-and-neck and chest CT scans.
Code for the paper "Analysis and comparison of cycle-consistent adversarial networks for CBCT to CT translation for adaptive radiotherapy in cervical and lung cancer patients"
MBIRJAX is a Python package for Model Based Iterative Reconstruction (MBIR) of images from tomographic data.
Computed tomography (CT) is one of the most widely used radiography exams worldwide for different diagnostic applications. However, CT scans involve ioniz- ing radiational exposure, which raises health concerns. Counter-intuitively, low- ering the adequate CT dose level introduces noise and reduces the image quality, which may impact clinical di…
detection of covid-19 from X-ray images Using keras and tensorflow
Code for COVID19 CT labeling. Submillimetric CT dataset provided as well.
Open source codes
A rule-based algorithm enabled the automatic extraction of disease labels from tens of thousands of radiology reports. These weak labels were used to create deep learning models to classify multiple diseases for three different organ systems in body CT.
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