feat: added new menu item workflows by topic #10
Workflow file for this run
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| name: Test | |
| on: | |
| pull_request: | |
| branches: [main, dev] | |
| jobs: | |
| generate-catalog: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: deployment | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: environment.yml | |
| # Test the normal catalog generation but restrict to first three repos for speed | |
| - name: test-generate-catalog | |
| shell: bash -l {0} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| OFFSET: 0 | |
| N_REPOS: 3 | |
| LATEST_COMMIT: 7 | |
| run: | | |
| python scripts/generate-catalog.py | |
| # Test specific repo, ensuring that the whole catalog generation script is | |
| # executed, in case the first repos above are skipped because it contains no | |
| # updates or no real snakemake workflow | |
| - name: test-generate-catalog-specific-repo | |
| shell: bash -l {0} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| TEST_REPO: snakemake-workflows/dna-seq-varlociraptor | |
| run: | | |
| python scripts/generate-catalog.py | |
| cleanup-catalog: | |
| runs-on: ubuntu-latest | |
| needs: generate-catalog | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: deployment | |
| uses: mamba-org/setup-micromamba@v2 | |
| with: | |
| environment-file: environment.yml | |
| # Test the cleanup script | |
| - name: cleanup-catalog | |
| shell: bash -l {0} | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| OFFSET: 0 | |
| N_REPOS: 3 | |
| run: | | |
| python scripts/cleanup-catalog.py |