Gaussian processes via gpytorch#782

Merged

BenjaminBossan merged 77 commits intomasterfrom

feature/gaussian-processes-via-gpytorch

Oct 9, 2021

Commits on Mar 26, 2021

[WIP] First working implementation of GPs
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Commits on Mar 28, 2021

Minor changes
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Don't reinitialize uninitialized net bc set_params
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Move cb_params update, improve comment
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Commits on Mar 29, 2021

Update notebook with a warning on init likelihood
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Remove unnecessary imports
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Simplify initialize_* methods
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Add first few unit tests
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Add unit test for set_params on uninitialized net
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Commits on Mar 30, 2021

Print only when verbose
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Remove init code related to likelihood
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Further clean up of set_params re-initialization
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Add more tests for re-initialization logic
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Commits on Mar 31, 2021

Rework logic of creating custom modules/optimizers
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Commits on Apr 1, 2021

Add battery of tests for custom modules/optimizers
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Implement changes to make tests pass
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[WIP] Update CHANGES
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Merge branch 'changed/refactor-init-more-consistency-custom-modules' into feature/gpytorch-integration-copy
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Simplify implementation based on refactoring
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[WIP] Document an edge case not covered yet
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Remove _PYTORCH_COMPONENTS global
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Commits on Apr 2, 2021

Update documentation reflecting the changes
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Commits on Apr 3, 2021

All optimizers perform updates automatically
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Commits on Apr 5, 2021

Address reviewer comments
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Commits on Apr 7, 2021

Merge branch 'changed/refactor-init-more-consistency-custom-modules' into feature/gpytorch-integration-copy
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Further updates based on new skorch refactoring
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Commits on Apr 8, 2021

Fix corner case with pre-initialized modules
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Merge branch 'changed/refactor-init-more-consistency-custom-modules' into feature/gpytorch-integration-copy
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Activate test about initialization message
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Commits on Apr 9, 2021

Extend test coverage, fix a typo
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Custom modules are set to train/eval mode
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Merge branch 'changed/refactor-init-more-consistency-custom-modules' into feature/gpytorch-integration-copy
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Update docs about train/eval mode
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Update notebook
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Move tests around, add comment about multioutput
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Commits on Apr 10, 2021

Complete docstrings
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Complete entries in CHANGES.md
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Merge branch 'changed/refactor-init-more-consistency-custom-modules' into feature/gpytorch-integration-copy
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Commits on Apr 12, 2021

Complete docs, docstrings, fix linting
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check_is_fitted also checks for likelihood_
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Fix a bug when likelihood/module are initialized
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Commits on Apr 13, 2021

Update notebook
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Update README
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Commits on Apr 18, 2021

Add documentation rst files
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Commits on Apr 23, 2021

Merge branch 'master' into changed/refactor-init-more-consistency-custom-modules
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Commits on Apr 24, 2021

Reviewer comment: Consider virtual params
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Reviewer comment: Docs: No need to return self
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Reviewer comment: Docs: explain NeuralNet.predict
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Reviewer comment: Docs: When not calling super
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Reviewer comment: get_all_learnable_params
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Reviewer comment: facilitate module initialization
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Merge branch 'changed/refactor-init-more-consistency-custom-modules' into feature/gpytorch-integration-copy
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Commits on Jun 13, 2021

Merge branch 'master' into feature/gpytorch-integration-copy
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Fix a bug that led to double-registration
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Merge branch 'bugfix/module-double-registration-after-clone' into feature/gpytorch-integration-copy
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Commits on Jun 16, 2021

Increment gpytorch minimum version
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[WIP] Try to fix some tests
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Commits on Jun 20, 2021

Fix duplicate parameter bug
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Merge branch 'master' into feature/gaussian-processes-via-gpytorch
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Revert changes in test_net.py
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Merge branch 'feature/gaussian-processes-via-gpytorch' of https://github.com/skorch-dev/skorch into feature/gaussian-processes-via-gpytorch
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Commits on Jun 27, 2021

Bump gpytorch version to 1.5
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Fix failing test caused by distribution shape
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Commits on Jul 4, 2021

For testing, exclude Python 3.6, PyTorch 1.7.1
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For testing, exclude Python 3.8 PyTorch 1.7.1
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Skip gpytorch tests for pytorch 1.7.1
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Modify pytorch version check
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Commits on Aug 15, 2021

Reviewer comment: Use pytest.mark.skipif

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Comment out code that is not currently needed
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Improve documentation example for GPs
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Commits on Aug 29, 2021

Reviewer comments: some improvements to notebook
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Use set_train_data for exact GPs
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Commits on Oct 3, 2021

Address reviewer comments by Jacob Gardner
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Address reviewer comments by Immanuel Bayer
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Commits on Oct 9, 2021

Fix typo in README
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Add entry about GPs to CHANGES
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Merge branch 'master' into feature/gaussian-processes-via-gpytorch
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