Repositories list

• czid-web

  Public
  Infectious Disease Sequencing Platform

  scienceresearchbiology+ 12sequencingcomputational-biologynext-generation-sequencingbioinformatics-pipelineglobal-healthvirologyinfectious-diseases+ 5

  TypeScript

  •

  MIT License

  •25•84•0•2•Updated Apr 9, 2025Apr 9, 2025

• single-cell-curation

  Public
  Code and documentation for the curation of cellxgene datasets

  Python

  •

  MIT License

  •26•43•41•0•Updated Apr 9, 2025Apr 9, 2025

• single-cell-data-portal

  Public
  The data portal supporting the submission, exploration, and management of projects and datasets to cellxgene.

  TypeScript

  •

  MIT License

  •14•68•264•21•Updated Apr 9, 2025Apr 9, 2025

• cryoet-data-portal

  Public
  CryoET Data Portal

  TypeScript

  •

  MIT License

  •13•22•272•14•Updated Apr 9, 2025Apr 9, 2025

• cryoet-data-portal-backend

  Public
  CryoET Data Portal API server & ingestion scripts

  Python

  •

  MIT License

  •5•4•7•13•Updated Apr 9, 2025Apr 9, 2025

• github-actions

  Public
  A collection of re-usable GitHub Actions

  HCL

  •

  MIT License

  •4•5•1•4•Updated Apr 9, 2025Apr 9, 2025

• argus-artifacts

  Public
  MIT License

  •0•1•0•0•Updated Apr 9, 2025Apr 9, 2025

• homebrew-tap

  Public
  Ruby

  •2•3•2•0•Updated Apr 9, 2025Apr 9, 2025

• sci-components

  Public
  2021 Science Design System Component Library

  reactcsstheme+ 1design-system

  TypeScript

  •

  MIT License

  •7•29•107•1•Updated Apr 9, 2025Apr 9, 2025

• edu-design-system

  Public
  Design system for Education Projects

  reactdesign-systemstyle-dictionary

  TypeScript

  •

  MIT License

  •4•30•1•2•Updated Apr 9, 2025Apr 9, 2025

• happy

  Public
  Happy Path Deployment Tool

  kubernetesinfrastructureterraform

  Go

  •

  MIT License

  •3•18•13•20•Updated Apr 9, 2025Apr 9, 2025

• go-misc

  Public
  miscellaneous go code

  Go

  •

  MIT License

  •3•7•1•0•Updated Apr 9, 2025Apr 9, 2025

• miniwdl

  Public
  Workflow Description Language developer tools & local runner

  wdlworkflow-description-language

  Python

  •

  MIT License

  •55•187•116•8•Updated Apr 9, 2025Apr 9, 2025

• argo-helm-charts

  Public
  Smarty

  •0•0•0•4•Updated Apr 8, 2025Apr 8, 2025

• cztack

  Public
  The CZI infrastructure stack.

  HCL

  •

  MIT License

  •25•66•3•4•Updated Apr 8, 2025Apr 8, 2025

• cellxgene

  Public
  An interactive explorer for single-cell transcriptomics data

  datavizscrna-seqtranscriptomics+ 2visualizationscientific

  JavaScript

  •

  MIT License

  •132•667•131•1•Updated Apr 8, 2025Apr 8, 2025

• blessclient

  Public
  Go client to negotiate SSH certificates

  czisshcertificate+ 3rsyncscpssh-agent

  Go

  •

  MIT License

  •17•64•8•4•Updated Apr 7, 2025Apr 7, 2025

• camelot

  Public
  Go

  •

  MIT License

  •0•1•0•0•Updated Apr 7, 2025Apr 7, 2025

• cellxgene-ontology-guide

  Public
  Notebook guide: https://github.com/chanzuckerberg/cellxgene-ontology-guide/blob/main/api/python/notebooks/Python%20API.ipynb

  Python

  •

  MIT License

  •1•7•9•8•Updated Apr 7, 2025Apr 7, 2025

• cellxgene-census

  Public
  CZ CELLxGENE Discover Census

  Jupyter Notebook

  •

  MIT License

  •23•98•96•16•Updated Apr 4, 2025Apr 4, 2025

• czid-workflows

  Public
  Portable WDL workflows for CZ ID production pipelines

  Python

  •

  MIT License

  •9•43•4•7•Updated Apr 4, 2025Apr 4, 2025

• open-science

  Public
  curated links and customized materials to support biomedical researchers in implementing open science approaches

  trainingopen-sourcecomputational-biology+ 4open-sciencereproducibilitybiomedical-researchreproducible-computational-methods

  JavaScript

  •

  Other

  •3•9•34•0•Updated Apr 3, 2025Apr 3, 2025

• swipe

  Public
  SFN-WDL infrastructure for pipeline execution - a template repository and Terraform module for SFN-WDL based projects

  wdlstep-functions

  Python

  •

  MIT License

  •5•8•3•4•Updated Apr 2, 2025Apr 2, 2025

• platformics

  Public
  Codegen Python GraphQL Entity Framework

  Python

  •

  MIT License

  •0•5•14•0•Updated Apr 1, 2025Apr 1, 2025

• cryoet-data-portal-neuroglancer

  Public
  CryoET Data Portal Neuroglancer configuration helper

  Python

  •

  MIT License

  •2•1•1•5•Updated Apr 1, 2025Apr 1, 2025

• fogg

  Public
  Manage Infrastructure as Code with less pain.

  terraforminfrastructure-as-codeinfrastructure

  Go

  •

  MIT License

  •19•297•38•4•Updated Apr 1, 2025Apr 1, 2025

• napari-hub

  Public
  Discover, install, and share napari plugins

  pythontrackingmachine-learning+ 12deep-learninganalysisdetectionpluginsthemesregistrationsegmentation+ 5

  TypeScript

  •

  MIT License

  •18•51•97•13•Updated Mar 27, 2025Mar 27, 2025

• single-cell-explorer

  Public
  Hosted version of cellxgene

  TypeScript

  •

  MIT License

  •3•13•60•2•Updated Mar 24, 2025Mar 24, 2025

• aws-oidc

  Public
  AWS OIDC Federation

  Go

  •

  MIT License

  •5•16•1•2•Updated Mar 24, 2025Mar 24, 2025

• delta-share

  Public
  Go

  •

  MIT License

  •0•0•0•2•Updated Mar 15, 2025Mar 15, 2025