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Pull requests: nf-core/tools

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Pull requests list

merge to main for patch 3.2.1
#3546 opened Apr 25, 2025 by mirpedrol Loading…
1
Template: Don't fail CI on latest-everything, post a comment instead
#3543 opened Apr 24, 2025 by mashehu Loading…
8
Addressing more cases than can happen when processing input and output values
#3541 opened Apr 23, 2025 by toniher Loading…
3
Drop python 3.8, add tests with python 3.13
#3538 opened Apr 15, 2025 by mashehu Loading… 3.4.0
bump nf-schema to 2.4.1
#3533 opened Apr 10, 2025 by nvnieuwk Loading…
9
Fix modules meta.yml file structure
#3532 opened Apr 7, 2025 by mirpedrol Loading…
5 of 7 tasks
6
Update dependency textual to v3
#3522 opened Apr 1, 2025 by renovate bot Loading…
1 task
1
Add docker downloads
#3517 opened Mar 26, 2025 by nikhil • Draft
4 tasks
4
Moved all singularity-related download functions into a new file download nf-core download
#3509 opened Mar 25, 2025 by muffato • Draft
4 tasks
@muffato
42
Move WorkflowRepo class into seperate file, since it will be shared b…
#3506 opened Mar 24, 2025 by MatthiasZepper • Draft
1 of 4 tasks
8
RO-crate content appear in the nf-core lint warning if there is a TODO
#3493 opened Mar 17, 2025 by ningyuxin1999 Loading…
4 tasks done
@ningyuxin1999
37
Fix multiple workflow in subworkflow
#3486 opened Mar 7, 2025 by LouisLeNezet Loading…
2 of 4 tasks
15
Document ext.args in meta yml
#3451 opened Feb 12, 2025 by awgymer Loading…
4 tasks
1
11
Remove args stub from module template to satisfy language server
#3403 opened Jan 17, 2025 by jfy133 Loading…
4 tasks
3.3.0
16
chore(deps): update dependency textual-dev to v1.7.0
#3378 opened Jan 1, 2025 by renovate bot Loading…
1 task
3262 Fix pipeline lint bug for pipelines with minimal template features awaiting-feedback Stale
#3265 opened Oct 30, 2024 by awgymer • Draft
4 tasks
2
create template GENERATE_DOWNSTREAM_SAMPLESHEETS for tools
#3261 opened Oct 29, 2024 by Joon-Klaps • Draft
4 tasks
3.3.0
10
Create pre-commit hooks
#3141 opened Aug 26, 2024 by edmundmiller Loading…
@edmundmiller
7
Adopt pyproject.toml
#3139 opened Aug 26, 2024 by edmundmiller • Draft
@edmundmiller
3
Automating pytest migration automation nf-test
#3138 opened Aug 23, 2024 by GallVp • Draft
3
Support version topic channels
#3093 opened Aug 1, 2024 by edmundmiller Loading…
4 tasks
@edmundmiller
5
fix the nested list bug that makes email not be delivered
#3081 opened Jul 25, 2024 by HaidYi Loading…
2 of 4 tasks
12
Add nf-core configs create sub command (attempt 2)
#3001 opened May 25, 2024 by jfy133 • Draft
1 of 9 tasks
3.4.0
1
5
Plugin to view .nextflow.log files using toolong WIP Work in progress
#2895 opened Mar 22, 2024 by ewels • Draft
2 of 4 tasks
3
Modules: Have component_files_identical check for new optional files in modules
#2816 opened Feb 29, 2024 by asp8200 Loading…
4 tasks
20
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