Search results

Error creating default environment

bugSomething isn't workingSomething isn't working

Status: Open.

#1583 In nf-core/rnaseq;

· gyori-andris opened on Jul 19, 2025

rnaseq using bam files

enhancement

Status: Open.

#1581 In nf-core/rnaseq;

· TarekGharsalli opened on Jul 17, 2025

Update Mus musculus default GTF

bugSomething isn't workingSomething isn't working

Status: Open.

#1579 In nf-core/rnaseq;

· Z-Zen opened on Jul 2, 2025

RSEM reference not passed to rsem-calculate-expression

bugSomething isn't workingSomething isn't working

Status: Open.

#1578 In nf-core/rnaseq;

· jreimertz opened on Jun 26, 2025

Enable extra flag which for BBSplit usemodulo set to True

enhancement

Status: Open.

#1577 In nf-core/rnaseq;

· joeellis1331 opened on Jun 23, 2025

Optimize configuration for lightweight run to get the salmon counts

Status: Open.

#1576 In nf-core/rnaseq;

· AJPreto opened on Jun 23, 2025

ERROR ~ Workflow <code>RNASEQ</code> declares 18 input channels but 0 were given

bugSomething isn't workingSomething isn't working

Status: Open.

#1575 In nf-core/rnaseq;

· CampingOnSeabed opened on Jun 21, 2025

Unknown configuration profile: 'singularity'

bugSomething isn't workingSomething isn't working

Status: Open.

#1574 In nf-core/rnaseq;

· CampingOnSeabed opened on Jun 21, 2025

publishDir name collision for salmon.merged.SummarizedExperiment.rds

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#1572 In nf-core/rnaseq;

· GallVp opened on Jun 20, 2025

mixture of umi stats in multiqc report

bugSomething isn't workingSomething isn't working

Status: Open.

#1570 In nf-core/rnaseq;

· idot opened on Jun 17, 2025

<code>getTrimGaloreReadsAfterFiltering</code> function fails to extract filtered read count from TrimGalore log

bugSomething isn't workingSomething isn't working

Status: Open.

Bug

#1557 In nf-core/rnaseq;

· iraiosub opened on May 30, 2025

· 

3.19.0

Is there an way to retrieve a list of download link for all singularity images required, by which I can manually download these images easier.

enhancement

Status: Open.

#1532 In nf-core/rnaseq;

· meng-hhh opened on Mar 27, 2025