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86 Open 624 Closed
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Issues list

unable to override of custom.config bug Something isn't working
#1538 opened Apr 12, 2025 by SunSun1324
documentation: salmon quant is run when skip_pseudo_alignment: True if strandedness set auto bug Something isn't working
#1537 opened Apr 11, 2025 by savagjh
PROCESS terminated for an unknown reason -- Likely it has been terminated by the external system bug Something isn't working
#1535 opened Apr 8, 2025 by Jacopot12
Unable to change time limit with custom config bug Something isn't working
#1533 opened Mar 28, 2025 by PeterWang0502
6
Is there an way to retrieve a list of download link for all singularity images required, by which I can manually download these images easier. enhancement
#1532 opened Mar 27, 2025 by meng-hhh
JSON schema: Rnaseq
#1531 opened Mar 26, 2025 by jen-reeve
13 of 15 tasks
1
@glichtenstein
Update to MultiQC 1.27.1 bug Something isn't working
#1527 opened Mar 26, 2025 by c-mertes
Salmon quantification output is missing genes when using gff3 annotation bug Something isn't working
#1524 opened Mar 24, 2025 by RaverJay
1
ERROR ~ Class definition not found: com/amazonaws/AmazonServiceException bug Something isn't working
#1519 opened Mar 19, 2025 by slives-lab
5
RSeQC Infer Experiment fails with --bam-csi-index enabled bug Something isn't working
#1517 opened Mar 18, 2025 by milos7250
1
"Local" nf-core modules without singularity container builds cause issues
#1516 opened Mar 18, 2025 by pontus
5
make trimming input reliant on fq lint output enhancement
#1514 opened Mar 17, 2025 by dmalzl
1
2
Improvements for processing prokaryotic datasets using the nf-core/rnaseq pipeline enhancement
#1512 opened Mar 12, 2025 by sebschulz1
@pcolaianni @Juassis
@apalleja @sebschulz1 @txellext
4
Running test profile fails bug Something isn't working
#1510 opened Mar 12, 2025 by bounlu
sortmerna "41 Illegal instruction" bug Something isn't working
#1509 opened Mar 10, 2025 by sunta3iouxos
1
Error: Process requirement exceeds available memory
#1507 opened Feb 17, 2025 by Lara149
1
Update StringTie to latest version enhancement
#1506 opened Feb 14, 2025 by rrdavis77
1
rnaseq workflow isn't outputing .merged.gene_counts.tsv bug Something isn't working
#1505 opened Feb 12, 2025 by diegogotex
Issue in RNA seq pipeline bug Something isn't working
#1504 opened Feb 12, 2025 by Varda06
issue while running nf core
#1502 opened Feb 5, 2025 by Varda06
1
salmon seems to remove transcripts
#1500 opened Jan 31, 2025 by jedi-bogate
Execution time of module tin.py
#1498 opened Jan 29, 2025 by reshu23
Indexing only run does not produce all indexes when using skip_alignment option bug Something isn't working
#1494 opened Jan 23, 2025 by pmoris
File "salmon.merged.gene_counts.tsv" Contains Floating-Point Values Instead of Raw Integer Counts bug Something isn't working
#1491 opened Jan 22, 2025 by Aeget1000
2
FATAL: While making image from oci registry: while building SIF from layers: conveyor failed to get when pulling a Singularity container bug Something isn't working
#1489 opened Jan 21, 2025 by b-lac
4
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