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Merge pull request #1376 from nf-core/pditommaso-patch-1
Fix invalid named parameter syntax
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CHANGELOG.md

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@@ -7,8 +7,9 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
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### Enhancements & fixes
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- [PR #1388](https://github.com/nf-core/rnaseq/pull/1351) - Adding Kraken2/Bracken on unaligned reads as an additional quality control step to detect sample contamination
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- [PR #1186](https://github.com/nf-core/rnaseq/pull/1186) - Bump pipeline version to 3.16.0dev
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- [PR #1376](https://github.com/nf-core/rnaseq/pull/1376) - Fix invalid named parameter syntax
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- [PR #1386](https://github.com/nf-core/rnaseq/pull/1386) - Bump pipeline version to 3.16.0dev
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- [PR #1388](https://github.com/nf-core/rnaseq/pull/1388) - Adding Kraken2/Bracken on unaligned reads as an additional quality control step to detect sample contamination
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### Parameters
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workflows/rnaseq/main.nf

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@@ -597,7 +597,7 @@ workflow RNASEQ {
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ch_strand_comparison = BAM_RSEQC.out.inferexperiment_txt
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.map {
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meta, strand_log ->
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def rseqc_inferred_strand = getInferexperimentStrandedness(strand_log, stranded_threshold = params.stranded_threshold, unstranded_threshold = params.unstranded_threshold)
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def rseqc_inferred_strand = getInferexperimentStrandedness(strand_log, params.stranded_threshold, params.unstranded_threshold)
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rseqc_strandedness = rseqc_inferred_strand.inferred_strandedness
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def status = 'fail'

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