Merge pull request #1249 from nf-core/nftest_rsem_merge_counts

Include nf-tests for rsem_merge_counts module

Author: adamrtalbot

modules/local/rsem_merge_counts/tests/main.nf.test

@@ -0,0 +1,33 @@
+nextflow_process {
+
+    name "Test Process RSEM_MERGE_COUNTS"
+    script "../main.nf"
+    process "RSEM_MERGE_COUNTS"
+
+    test("Should run without failures") {
+
+        when {
+            process {
+                """
+                input[0] = Channel.of([
+                    file(params.pipelines_testdata_base_path + "rsem_merge_counts/genes/RAP1_IAA_30M_REP1.genes.results", checkIfExists: true),
+                    file(params.pipelines_testdata_base_path + "rsem_merge_counts/genes/RAP1_UNINDUCED_REP1.genes.results", checkIfExists: true),
+                    file(params.pipelines_testdata_base_path + "rsem_merge_counts/genes/RAP1_UNINDUCED_REP2.genes.results", checkIfExists: true)
+                ]).collect()
+                input[1] = Channel.of([
+                    file(params.pipelines_testdata_base_path + "rsem_merge_counts/isoforms/RAP1_IAA_30M_REP1.isoforms.results", checkIfExists: true),
+                    file(params.pipelines_testdata_base_path + "rsem_merge_counts/isoforms/RAP1_UNINDUCED_REP1.isoforms.results", checkIfExists: true),
+                    file(params.pipelines_testdata_base_path + "rsem_merge_counts/isoforms/RAP1_UNINDUCED_REP2.isoforms.results", checkIfExists: true)
+                ]).collect()
+                """
+            }
+        }
+
+        then {
+            assert process.success
+            assert snapshot(process.out).match()
+        }
+
+    }
+
+}

modules/local/rsem_merge_counts/tests/main.nf.test.snap

@@ -0,0 +1,43 @@
+{
+    "Should run without failures": {
+        "content": [
+            {
+                "0": [
+                    "rsem.merged.gene_counts.tsv:md5,7d1da94077dc2f90cfb2c793ca5b7446"
+                ],
+                "1": [
+                    "rsem.merged.gene_tpm.tsv:md5,39bad606eb012456bba1d995fe0feb5f"
+                ],
+                "2": [
+                    "rsem.merged.transcript_counts.tsv:md5,e40bba0aafc5904361513b3513c217ad"
+                ],
+                "3": [
+                    "rsem.merged.transcript_tpm.tsv:md5,abbaac45f9938716c58d604299ea284e"
+                ],
+                "4": [
+                    "versions.yml:md5,48ca3e12c91829af8019462b3f6aa29c"
+                ],
+                "counts_gene": [
+                    "rsem.merged.gene_counts.tsv:md5,7d1da94077dc2f90cfb2c793ca5b7446"
+                ],
+                "counts_transcript": [
+                    "rsem.merged.transcript_counts.tsv:md5,e40bba0aafc5904361513b3513c217ad"
+                ],
+                "tpm_gene": [
+                    "rsem.merged.gene_tpm.tsv:md5,39bad606eb012456bba1d995fe0feb5f"
+                ],
+                "tpm_transcript": [
+                    "rsem.merged.transcript_tpm.tsv:md5,abbaac45f9938716c58d604299ea284e"
+                ],
+                "versions": [
+                    "versions.yml:md5,48ca3e12c91829af8019462b3f6aa29c"
+                ]
+            }
+        ],
+        "meta": {
+            "nf-test": "0.8.4",
+            "nextflow": "23.10.1"
+        },
+        "timestamp": "2024-03-09T17:13:37.377348"
+    }
+}