nf-core
diff --git a/‎CHANGELOG.md
+1 b/‎CHANGELOG.md
+1
diff --git a/‎modules.json
+6-1 b/‎modules.json
+6-1
diff --git a/‎modules/local/bedtools_genomecov/main.nf
-53 b/‎modules/local/bedtools_genomecov/main.nf
-53
diff --git a/‎modules/local/bedtools_genomecov/nextflow.config
-11 b/‎modules/local/bedtools_genomecov/nextflow.config
-11
diff --git a/‎modules/nf-core/bbmap/bbsplit/main.nf
-1 b/‎modules/nf-core/bbmap/bbsplit/main.nf
-1
diff --git a/‎modules/nf-core/bedtools/genomecov/environment.yml
+7 b/‎modules/nf-core/bedtools/genomecov/environment.yml
+7
diff --git a/‎modules/nf-core/bedtools/genomecov/main.nf
+74 b/‎modules/nf-core/bedtools/genomecov/main.nf
+74
diff --git a/‎modules/nf-core/bedtools/genomecov/meta.yml
+59 b/‎modules/nf-core/bedtools/genomecov/meta.yml
+59
diff --git a/‎modules/nf-core/bedtools/genomecov/nextflow.config
+19 b/‎modules/nf-core/bedtools/genomecov/nextflow.config
+19
diff --git a/‎modules/nf-core/bedtools/genomecov/tests/main.nf.test
+122 b/‎modules/nf-core/bedtools/genomecov/tests/main.nf.test
+122
@@ -22,6 +22,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 - [PR #1226](https://github.com/nf-core/rnaseq/pull/1226) - Reuse bbsplit index and don't keep overwriting ([#1225](https://github.com/nf-core/rnaseq/issues/1225))
 - [PR #1229](https://github.com/nf-core/rnaseq/pull/1229) - Template update for nf-core/tools v2.13.1
 - [PR #1231](https://github.com/nf-core/rnaseq/pull/1231) - Add sortmerna index possibilities
+- [PR #1234](https://github.com/nf-core/rnaseq/pull/1234) - Switch to genomecov from nf-core
 
 ### Parameters
 
 
@@ -7,7 +7,12 @@
                 "nf-core": {
                     "bbmap/bbsplit": {
                         "branch": "master",
-                        "git_sha": "dcfa9a18a74300f7fb994cdbf518c981f22de73d",
+                        "git_sha": "ecc2139bc014be1d0117d6c69458d82fbfa3328f",
+                        "installed_by": ["modules"]
+                    },
+                    "bedtools/genomecov": {
+                        "branch": "master",
+                        "git_sha": "81b90194ce9911dbd55bba2c65c6919f6677abc4",
                         "installed_by": ["modules"]
                     },
                     "cat/fastq": {