You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
This pkg is useful to allow for varied input formats (e.g., genbank and fasta, compressed and not), and automatically convert everything to plaintext fasta prior to analysis with another pkg that requires FastA inputs.
There's a bioconda recipe here and a corresponding container here.
Version print
any2fasta -v
yields any2fasta 0.4.2
Help menu
any2fasta -h
Test
note: this is from cwd of the github repo (tiny files are included for testing)
git clone [email protected]:tseemann/any2fasta.git
cd any2fasta
for ext in fq gbk gff; do
any2fasta test.$ext > OUTPUT.$ext.fasta
done
du -sh OUTPUT.*.fasta
# 300K OUTPUT.fq.fasta
# 4.5M OUTPUT.gbk.fasta
# 4.8M OUTPUT.gff.fasta
Are you going to work on this?
If I'm planning to work on this module, I added myself to the Assignees to facilitate tracking who is working on the module
The text was updated successfully, but these errors were encountered:
Is there an existing module for this?
Is there an open PR for this?
Is there an open issue for this?
Further Information
This pkg is useful to allow for varied input formats (e.g., genbank and fasta, compressed and not), and automatically convert everything to plaintext fasta prior to analysis with another pkg that requires FastA inputs.
There's a bioconda recipe here and a corresponding container here.
Version print
any2fasta -v
yields
any2fasta 0.4.2
Help menu
any2fasta -h
Test
Are you going to work on this?
Assignees
to facilitate tracking who is working on the moduleThe text was updated successfully, but these errors were encountered: