swapping to use the newer module args setup

Author: Katerina10-cloud

modules/nf-core/sparsesignatures/tests/main.nf.test

@@ -13,6 +13,11 @@ nextflow_process {
         config "./nextflow.config"
 
         when {
+
+            params {
+              module_args = '[genome:GRCh38, K:2:3, nmf_runs:3, iterations:5, max_iterations_lasso:80, cross_validation_repetitions:3, cross_validation_iterations:3, cross_validation_entries:0.01, lambda_values_alpha:c(0.00, 0.01), lambda_values_beta:c(0.01, 0.05), lambda_rate_alpha:0, num_processes:all, seed:42]'
+            }
+
             process {
                 """
                 input[0] = [

modules/nf-core/sparsesignatures/tests/nextflow.config

@@ -6,22 +6,7 @@
 
 process {
     withName: SPARSE_SIGNATURES {
-        ext.args = [
-            genome : "GRCh38",
-            K : "2:3",
-            nmf_runs : "3",
-            iterations: "5",
-            max_iterations_lasso : "80",
-            cross_validation_repetitions : "3",
-            cross_validation_iterations : "3",
-            cross_validation_entries : "0.01",
-            lambda_values_alpha : "c(0.00, 0.01)",
-            lambda_values_beta : "c(0.01, 0.05)",
-            lambda_rate_alpha: "0",
-            num_processes : "all",
-            seed: "42"
-            
-        ]
+        ext.args = params.module_args
     }
 }