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12 Open 5 Closed
12 Open 5 Closed
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Issues list

Dump tool versions into MultiQC enhancement Improvement for existing functionality
#23 opened Mar 24, 2025 by ajandria
Add QC plots to MultiQC enhancement Improvement for existing functionality
#22 opened Mar 24, 2025 by ajandria
Standardize process inputs/outputs enhancement Improvement for existing functionality
#21 opened Mar 24, 2025 by ajandria
Investigate possibility of inferring sex of samples and comparing them with sex from the pheno sheet enhancement Improvement for existing functionality
#20 opened Mar 24, 2025 by ajandria
Create subworkflows for a given process type enhancement Improvement for existing functionality
#19 opened Mar 24, 2025 by ajandria
Assess integration of methylCIBERSORT into the methylarray pipeline enhancement Improvement for existing functionality
#18 opened Mar 24, 2025 by ajandria
Split the single pipeline container which all processes use into containers used only in a given processes enhancement Improvement for existing functionality
#17 opened Mar 24, 2025 by ajandria
Add package versions to conda environment.yaml files enhancement Improvement for existing functionality
#16 opened Mar 24, 2025 by ajandria
Support more genome versions and polish handling of --bs_genome_path enhancement Improvement for existing functionality
#15 opened Mar 24, 2025 by ajandria
Make ADJUST_BATCH_EFFECT optional when phenotypes are present enhancement Improvement for existing functionality
#14 opened Mar 24, 2025 by ajandria
Make REMOVE_SNP_PROBES optional enhancement Improvement for existing functionality
#10 opened Mar 24, 2025 by ajandria
2
5
Improve input logic enhancement Improvement for existing functionality
#8 opened Mar 24, 2025 by ajandria
1
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