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Fix rgi/main module #430

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Merged
merged 3 commits into from
Dec 19, 2024
Merged

Fix rgi/main module #430

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9e891d4
Update rgi/main
jasmezz Dec 18, 2024
2531f7d
Update CHANGELOG.md
jasmezz Dec 19, 2024
9541325
Update snapshot (due to CARD database update)
jasmezz Dec 19, 2024
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4 changes: 3 additions & 1 deletion CHANGELOG.md
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Expand Up @@ -7,12 +7,14 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### `Added`

- [#421](https://github.com/nf-core/funcscan/pull/421) Updated to nf-core template 3.0.2 (by @jfy133)
- [#421](https://github.com/nf-core/funcscan/pull/421) Updated to nf-core template 3.0.2. (by @jfy133)
- [#427](https://github.com/nf-core/funcscan/pull/427) AMPcombi now can use multiple other databases for classifications. (by @darcy220606)
- [#429](https://github.com/nf-core/funcscan/pull/429) Updated to nf-core template 3.1.0. (by @jfy133 and @jasmezz)

### `Fixed`

- [#427](https://github.com/nf-core/funcscan/pull/427) Fixed the AMP reference database issues reported by users, due to non-ASCII characters. (by @darcy220606)
- [#430](https://github.com/nf-core/funcscan/pull/430) Updated `rgi/main` module to fix incorrect variable name. (by @amizeranschi and @jasmezz)

### `Dependencies`

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2 changes: 1 addition & 1 deletion modules.json
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Expand Up @@ -192,7 +192,7 @@
},
"rgi/main": {
"branch": "master",
"git_sha": "666652151335353eef2fcd58880bcef5bc2928e1",
"git_sha": "41623bcb962bd02d1a45ad81c1853547ebd26f5f",
"installed_by": ["modules"]
},
"seqkit/seq": {
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2 changes: 1 addition & 1 deletion modules/nf-core/rgi/main/main.nf
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16 changes: 8 additions & 8 deletions modules/nf-core/rgi/main/tests/main.nf.test.snap
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6 changes: 3 additions & 3 deletions tests/test_preannotated.nf.test.snap
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Expand Up @@ -143,9 +143,9 @@
},
"rgi": {
"content": [
"sample_1.txt:md5,dde77ae2dc240ee4717d8d33a92dfb66",
"sample_2.txt:md5,0e652d35ef6e9272aa194b55db609e75",
"sample_3.txt:md5,dde77ae2dc240ee4717d8d33a92dfb66"
"sample_1.txt:md5,ff8f179d06d8566d8cf779fc7d1f4955",
"sample_2.txt:md5,cc4ae1fb9e0d5f79ef5105d640c7b748",
"sample_3.txt:md5,ff8f179d06d8566d8cf779fc7d1f4955"
],
"meta": {
"nf-test": "0.9.0",
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