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Release PR for 1.1.4#316

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jasmezz merged 47 commits intomasternf-core/funcscan:masterfrom

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Nov 7, 2023

Commits

Commits on Aug 11, 2023

• Post-release version bump

  jasmezz

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• Update changelog

  jasmezz

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Commits on Aug 22, 2023

• stop prokka from renaming contigs by default

  Darcy220606

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• CHANGELOG prettier

  Darcy220606

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Commits on Aug 23, 2023

• Fix new parameter

  Darcy220606

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Commits on Aug 25, 2023

• Fix deepARG test profile and use more stable deepARG db URL

  jfy133

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• Reduce deepARG test annotaion tool to prevent zenodo DL throttling

  jfy133

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• Merge pull request #304 from nf-core/post-release_version_bump

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• Merge remote-tracking branch 'origin/dev' into stablish-deeparg

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• Update CHANBGELOG

  jfy133

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• Apply suggestions from code review

  jfy133

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• Add review requests

  Darcy220606

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• Add DeepARG Zenodo link to usage docs

  jasmezz

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• Merge branch 'dev' into rename_contigs_prokka

  Darcy220606

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• Update .github/workflows/ci.yml

  jfy133

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• Merge pull request #307 from nf-core/stablish-deeparg

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  jfy133

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Commits on Aug 30, 2023

• Merge branch 'dev' into rename_contigs_prokka

  Darcy220606

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• Merge branch 'nf-core:master' into rename_contigs_prokka

  Darcy220606

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• Update amrfinderplus, bakta, and multiqc

  jasmezz

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  2d1a2ec

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• Update changelog

  jasmezz

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• Revert "Update changelog"

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• Update changelog

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Commits on Aug 31, 2023

• Merge pull request #306 from Darcy220606/rename_contigs_prokka

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  Darcy220606

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Commits on Sep 18, 2023

• fix input schema to accept uncompressed fasta; fix #309

  tavareshugo

  committed
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Commits on Sep 25, 2023

• Template update for nf-core/tools version 2.10

  nf-core-bot

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Commits on Sep 27, 2023

• Merge branch 'dev' into nf-core-template-merge-2.10

  jasmezz

  authored
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• Remove duplicated import line in funcscan.nf

  jasmezz

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Commits on Sep 28, 2023

• Apply suggestions from code review

  jasmezz

  committed
  8096f0a

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• Update amrfinderplus, fastqc

  jasmezz

  committed
  cd0f914

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• Comment out duplicate import line

  jasmezz

  committed
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• Remove fastqc

  jasmezz

  committed
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Commits on Sep 29, 2023

• Remove duplicate import line [skip ci]

  jasmezz

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• Merge pull request #311 from nf-core/nf-core-template-merge-2.10

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  jasmezz

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Commits on Oct 2, 2023

• Merge branch 'dev' into modules_update

  jasmezz

  committed
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Commits on Oct 5, 2023

• Merge pull request #308 from nf-core/modules_update

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Commits on Oct 9, 2023

• Merge remote-tracking branch 'upstream/dev' into fix_gz

  tavareshugo

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Commits on Oct 13, 2023

• update changelog

  tavareshugo

  committed
  a2b8802

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• Merge pull request #310 from tavareshugo/fix_gz

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  jasmezz

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  ffba284

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• Update version + changelog + metromap

  jasmezz

  committed
  61ba895

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• Update multiqc_config.yml

  jasmezz

  committed
  66a5fdc

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Commits on Nov 3, 2023

• Remove deepbgc CI tests

  jasmezz

  committed
  c4f0a54

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Commits on Nov 7, 2023

• Apply suggestions from code review

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  jasmezz

  and

  louperelo

  authored
  07fdae4

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• Fix .github/workflows/ci.yml

  jasmezz

  authored
  6aebacf

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• Update CHANGELOG.md [skip ci]

  jasmezz

  authored
  c84e720

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• Merge pull request #314 from nf-core/release-version-bump

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  jasmezz

  authored
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• Apply suggestions from code review [skip ci]

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  jasmezz

  and

  mashehu

  authored
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• Apply suggestions from code review [skip ci]

  jasmezz

  authored
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