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Fix error messages #248

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Merged
merged 3 commits into from
Mar 28, 2023
Merged

Fix error messages #248

merged 3 commits into from
Mar 28, 2023

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jasmezz
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@jasmezz jasmezz commented Mar 27, 2023

Closes #247

PR checklist

  • This comment contains a description of changes (with reason).
  • If you've fixed a bug or added code that should be tested, add tests!
  • If you've added a new tool - have you followed the pipeline conventions in the contribution docs- [ ] If necessary, also make a PR on the nf-core/funcscan branch on the nf-core/test-datasets repository.
  • Make sure your code lints (nf-core lint).
  • Ensure the test suite passes (nextflow run . -profile test,docker --outdir <OUTDIR>).
  • Usage Documentation in docs/usage.md is updated.
  • Output Documentation in docs/output.md is updated.
  • CHANGELOG.md is updated.
  • README.md is updated (including new tool citations and authors/contributors).

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This PR is against the master branch ❌

  • Do not close this PR
  • Click Edit and change the base to dev
  • This CI test will remain failed until you push a new commit

Hi @jasmezz,

It looks like this pull-request is has been made against the nf-core/funcscan master branch.
The master branch on nf-core repositories should always contain code from the latest release.
Because of this, PRs to master are only allowed if they come from the nf-core/funcscan dev branch.

You do not need to close this PR, you can change the target branch to dev by clicking the "Edit" button at the top of this page.
Note that even after this, the test will continue to show as failing until you push a new commit.

Thanks again for your contribution!

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github-actions bot commented Mar 27, 2023 •
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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit 063db6f

+| ✅ 157 tests passed       |+
!| ❗   1 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

✅ Tests passed:

Run details

  • nf-core/tools version 2.7.2
  • Run at 2023-03-27 11:30:13

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nf-core lint overall result: Passed ✅ ⚠️

Posted for pipeline commit cab24bd

+| ✅ 157 tests passed       |+
!| ❗   1 tests had warnings |!

❗ Test warnings:

  • pipeline_todos - TODO string in methods_description_template.yml: #Update the HTML below to your prefered methods description, e.g. add publication citation for this pipeline

✅ Tests passed:

Run details

  • nf-core/tools version 2.7.2
  • Run at 2023-03-27 10:18:51

@jasmezz jasmezz changed the base branch from master to dev March 27, 2023 10:21
@jasmezz jasmezz merged commit 5573fca into dev Mar 28, 2023
@jasmezz jasmezz deleted the fix-error-messages branch March 28, 2023 09:13
@jasmezz jasmezz mentioned this pull request Apr 4, 2023
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@jasmezz jasmezz mentioned this pull request Apr 26, 2023
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@jfy133 jfy133 jfy133 approved these changes

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Update pipeline terminate code
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@jasmezz @jfy133