update all crates.io dependencies

[dignifiedquire]

Need to do a review of all existing dependencies and update them where possible & appropriate.

[dignifiedquire]

@Arqu I am assuming your dependency cleaning does this, right?

[Arqu]

Yes, I'm slowly crawling through the mess trying to eliminate unused ones, reduce duplicates and just overall bump and clean up everything.

[Arqu]

ref #2932