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Testing: tests that are TODO

Status: Open.

#14 In mpc-bioinformatics/bppg;

· ItsMeKathy opened on May 25, 2025

Testing: Can not test PDF content

Status: Open.

#13 In mpc-bioinformatics/bppg;

· ItsMeKathy opened on May 25, 2025

What to do when one Ci is estimated as 0?

bugSomething isn't workingSomething isn't working

Status: Open.

#9 In mpc-bioinformatics/bppg;

· KarinSchork opened on Oct 15, 2024

refactor some functions to directly use igraph objects instead of matrices

enhancementNew feature or requestNew feature or request

Status: Open.

#8 In mpc-bioinformatics/bppg;

· KarinSchork opened on Sep 24, 2024

Incorporate information on true ratios and taxonomy/spike-in status

enhancementNew feature or requestNew feature or request

Status: Open.

#7 In mpc-bioinformatics/bppg;

· KarinSchork opened on Sep 11, 2024

add code for subgraph matching

enhancementNew feature or requestNew feature or request

Status: Open.

#6 In mpc-bioinformatics/bppg;

· KarinSchork opened on Jul 15, 2024

make a nextflow workflow for generating the graphs

enhancementNew feature or requestNew feature or request

Status: Open.

#5 In mpc-bioinformatics/bppg;

· KarinSchork opened on Jul 15, 2024

table with infos per protein node

enhancementNew feature or requestNew feature or request

Status: Open.

#3 In mpc-bioinformatics/bppg;

· KarinSchork opened on Jul 15, 2024

Needed unit tests

Status: Open.

#2 In mpc-bioinformatics/bppg;

· KarinSchork opened on Jul 27, 2023

collapsing peptide nodes for quant data

enhancementNew feature or requestNew feature or request

Status: Open.

#1 In mpc-bioinformatics/bppg;

· KarinSchork opened on Jun 5, 2023