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Use conda version of libsemigroups in the CI #240

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3ddb079
Use conda version of libsemigroups
Joseph-Edwards Apr 30, 2025
0d514d8
Add main branch test
Joseph-Edwards May 1, 2025
91e4179
Add workflow to run on specific branch and fork
Joseph-Edwards May 1, 2025
c578661
Use ccache
Joseph-Edwards May 1, 2025
57f3ef0
Use micromamba for python
Joseph-Edwards May 1, 2025
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90 changes: 90 additions & 0 deletions .github/workflows/custom-branch.yml
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Original file line number Diff line number Diff line change
@@ -0,0 +1,90 @@
name: Run tests on custom libsemigroups branch
on:
workflow_dispatch:
inputs:
branch:
description: "The branch of libsemigroups to clone"
required: true
type: string
fork:
description: "The fork of libsemigroups to clone"
required: false
type: string
default: libsemigroups/libsemigroups

concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true

jobs:
run-tests:
name: "${{ inputs.branch }}, ${{ matrix.os }}, Python 3.13"
strategy:
fail-fast: false
matrix:
os: ["ubuntu-latest", "macOS-latest"]
include:
- os: "ubuntu-latest"
compiler: "ccache g++"
- os: "macOS-latest"
compiler: "ccache clang++"
runs-on: ${{ matrix.os }}
timeout-minutes: 15
steps:
- uses: actions/checkout@v4
- name: "Setup ccache . . ."
uses: Chocobo1/setup-ccache-action@v1
with:
update_packager_index: false
install_ccache: true
- name: "Create micromamba environment . . ."
uses: mamba-org/setup-micromamba@v2
with:
environment-name: libsemigroups
cache-environment: true
create-args: >-
python=3.13
pip
fmt
eigen
- name: "Set environment variables . . ."
run: |
echo "PKG_CONFIG_PATH=$MAMBA_ROOT_PREFIX/envs/libsemigroups/lib/pkgconfig:$MAMBA_ROOT_PREFIX/envs/libsemigroups/share/pkgconfig:/usr/local/lib/pkgconfig" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=$MAMBA_ROOT_PREFIX/envs/libsemigroups/lib:/usr/local/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
echo "PATH=$MAMBA_ROOT_PREFIX/envs/libsemigroups/bin:$PATH" >> $GITHUB_ENV
- name: "Check Python version . . ."
run: |
python --version
pip --version
- name: "Install make requirements (Mac only) . . ."
if: ${{ matrix.os == 'macOS-latest' }}
run: brew install autoconf automake libtool
- name: "Install libsemigroups . . ."
run: |
git clone --depth 1 --branch ${{ inputs.branch }} https://github.com/${{ inputs.fork }}.git
cd libsemigroups
./autogen.sh
./configure CXX="${{ matrix.compiler }}" CXXFLAGS="-O2 -g" --disable-hpcombi --with-external-fmt --with-external-eigen
sudo make install -j8
ccache -s
- name: "Install requirements libsemigroups . . ."
run: pip install -r requirements.txt
- name: "Pip install libsemigroups_pybind11 . . ."
run: |
CXX="${{ matrix.compiler }}" pip install . -v
ccache -s
- name: "Run tests . . ."
run: |
python -m pytest -vv tests/test_*.py
- name: "Run doc tests . . ."
run: |
etc/make-doc.sh # so that all files are generated!
cd docs
python -m sphinx -b doctest -d _build/doctrees source _build/doctest
- name: "Pip install pylint + cpplint . . ."
run: |
pip install pylint cpplint
- name: "Run pylint and cpplint . . ."
run: |
python -m pylint setup.py tests/*.py libsemigroups_pybind11/*.py
python -m cpplint src/*.hpp src/*.cpp
136 changes: 69 additions & 67 deletions .github/workflows/tests.yml
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Original file line number Diff line number Diff line change
Expand Up @@ -6,131 +6,133 @@ concurrency:
cancel-in-progress: true

jobs:
ubuntu:
conda-version:
name: "Conda, ${{ matrix.os }}, Python ${{ matrix.python_version }}"
strategy:
fail-fast: false
matrix:
python_version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
runs-on: ubuntu-latest
os: ["ubuntu-latest", "macOS-latest"]
include:
- os: "ubuntu-latest"
compiler: "ccache g++"
- os: "macOS-latest"
compiler: "ccache clang++"
runs-on: ${{ matrix.os }}
timeout-minutes: 15
defaults:
run:
shell: bash -l {0}
env:
CXX: "ccache g++"
CXXFLAGS: "-O2 -g"
steps:
- uses: actions/checkout@v4
- name: "Create micromamba environment"
uses: mamba-org/setup-micromamba@v1
- name: "Setup ccache . . ."
uses: Chocobo1/setup-ccache-action@v1
with:
update_packager_index: false
install_ccache: true
- name: "Create micromamba environment . . ."
uses: mamba-org/setup-micromamba@v2
with:
environment-name: libsemigroups
cache-environment: true
create-args: >-
python=${{ matrix.python_version }}
fmt
pip
libsemigroups
- name: "Set environment variables . . ."
run: |
echo "PKG_CONFIG_PATH=$MAMBA_ROOT_PREFIX/envs/libsemigroups/lib/pkgconfig:$MAMBA_ROOT_PREFIX/envs/libsemigroups/share/pkgconfig:/usr/local/lib/pkgconfig" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=$MAMBA_ROOT_PREFIX/envs/libsemigroups/lib:/usr/local/lib" >> $GITHUB_ENV
- name: "Setup ccache . . ."
uses: Chocobo1/setup-ccache-action@v1
with:
update_packager_index: false
install_ccache: true
- name: "Install libsemigroups . . ."
run: |
git clone --depth 1 --branch stable-3.0 https://github.com/libsemigroups/libsemigroups.git
cd libsemigroups
./autogen.sh && ./configure CXX="$CXX" CXXFLAGS="$CXXFLAGS" --disable-hpcombi --with-external-fmt && sudo make install -j8
ccache -s
- name: "Python version . . ."
echo "PATH=$MAMBA_ROOT_PREFIX/envs/libsemigroups/bin:$PATH" >> $GITHUB_ENV
- name: "Check Python version . . ."
run: |
python --version
pip3 --version
- name: "Pip installing requirements.txt . . ."
run: |
pip3 install -r requirements.txt
- name: "Pip3 installing libsemigroups_pybind11 . . ."
pip --version
- name: "Install requirements . . ."
run: pip install -r requirements.txt
- name: "Pip install libsemigroups_pybind11 . . ."
run: |
echo $PKG_CONFIG_PATH
pip3 install . -v
- name: "python -m pytest -vv tests/test_*.py . . ."
CXX="${{ matrix.compiler }}" pip install . -v
ccache -s
- name: "Run tests . . ."
run: |
python -m pytest -vv tests/test_*.py
- name: "Run doc tests . . ."
run: |
etc/make-doc.sh # so that all files are generated!
cd docs
python -m sphinx -b doctest -d _build/doctrees source _build/doctest
- name: "Pip3 installing pylint + cpplint . . ."
- name: "Pip install pylint + cpplint . . ."
run: |
pip3 install pylint cpplint
- name: "Running pylint and cpplint . . ."
- name: "Run pylint and cpplint . . ."
run: |
python -m pylint setup.py tests/*.py libsemigroups_pybind11/*.py
python -m cpplint src/*.hpp src/*.cpp
macosx:
main-branch:
name: "Main, ${{ matrix.os }}, Python 3.13"
strategy:
fail-fast: false
matrix:
python_version: ["3.9", "3.10", "3.11", "3.12", "3.13"]
runs-on: macOS-latest
os: ["ubuntu-latest", "macOS-latest"]
include:
- os: "ubuntu-latest"
compiler: "ccache g++"
- os: "macOS-latest"
compiler: "ccache clang++"
runs-on: ${{ matrix.os }}
timeout-minutes: 15
env:
CXX: "ccache clang++"
CXXFLAGS: "-O2 -g"
steps:
- uses: actions/checkout@v4
- name: "Create micromamba environment"
uses: mamba-org/setup-micromamba@v1
- name: "Setup ccache . . ."
uses: Chocobo1/setup-ccache-action@v1
with:
update_packager_index: false
install_ccache: true
- name: "Create micromamba environment . . ."
uses: mamba-org/setup-micromamba@v2
with:
environment-name: libsemigroups
cache-environment: true
create-args: >-
python=${{ matrix.python_version }}
python=3.13
pip
fmt
eigen
- name: "Set environment variables . . ."
run: |
echo "PKG_CONFIG_PATH=$MAMBA_ROOT_PREFIX/envs/libsemigroups/lib/pkgconfig:$MAMBA_ROOT_PREFIX/envs/libsemigroups/share/pkgconfig:/usr/local/lib/pkgconfig" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=$MAMBA_ROOT_PREFIX/envs/libsemigroups/lib:/usr/local/lib" >> $GITHUB_ENV
echo "LD_LIBRARY_PATH=$MAMBA_ROOT_PREFIX/envs/libsemigroups/lib:/usr/local/lib:$LD_LIBRARY_PATH" >> $GITHUB_ENV
echo "PATH=$MAMBA_ROOT_PREFIX/envs/libsemigroups/bin:$PATH" >> $GITHUB_ENV
- name: "Install libsemigroups dependencies . . ."
- name: "Check Python version . . ."
run: |
python --version
pip --version
- name: "Install make requirements (Mac only) . . ."
if: ${{ matrix.os == 'macOS-latest' }}
run: brew install autoconf automake libtool
- name: "Setup ccache . . ."
uses: Chocobo1/setup-ccache-action@v1
with:
update_packager_index: false
install_ccache: true
- name: "Install libsemigroups . . ."
run: |
git clone --depth 1 --branch stable-3.0 https://github.com/libsemigroups/libsemigroups.git
git clone --depth 1 --branch main https://github.com/libsemigroups/libsemigroups.git
cd libsemigroups
./autogen.sh
./configure CXX="$CXX" CXXFLAGS="$CXXFLAGS" --disable-hpcombi --with-external-fmt
./autogen.sh
./configure CXX="${{ matrix.compiler }}" CXXFLAGS="-O2 -g" --disable-hpcombi --with-external-fmt --with-external-eigen
sudo make install -j8
ccache -s
- name: "Python version . . ."
- name: "Install requirements libsemigroups . . ."
run: pip install -r requirements.txt
- name: "Pip install libsemigroups_pybind11 . . ."
run: |
python --version
pip3 --version
- name: "Pip installing requirements.txt . . ."
run: |
pip3 install -r requirements.txt
- name: "Pip3 installing libsemigroups_pybind11 . . ."
run: |
echo $PKG_CONFIG_PATH
pip3 install . -v
- name: "python -m pytest -vv tests/test_*.py . . ."
CXX="${{ matrix.compiler }}" pip install . -v
ccache -s
- name: "Run tests . . ."
run: |
python -m pytest -vv tests/test_*.py
- name: "Run doc tests . . ."
run: |
etc/make-doc.sh # so that all files are generated!
cd docs
python -m sphinx -b doctest -d _build/doctrees source _build/doctest
- name: "Pip3 installing pylint + cpplint . . ."
- name: "Pip install pylint + cpplint . . ."
run: |
pip3 install pylint cpplint
- name: "Running pylint and cpplint . . ."
pip install pylint cpplint
- name: "Run pylint and cpplint . . ."
run: |
python -m pylint setup.py tests/*.py libsemigroups_pybind11/*.py
python -m cpplint src/*.hpp src/*.cpp
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