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52 Open 203 Closed
52 Open 203 Closed
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Issues list

Streamline VCF annotator ABC definition VCF annotator Issues relating to VRS annotation of VCFs
#546 opened Apr 14, 2025 by jsstevenson
Modify to_spdi translator to either fetch the ref/alt or provide an option to enable this
#544 opened Apr 11, 2025 by theferrit32
@theferrit32
3
Change seqrepo dataproxy env vars to all use SEQREPO_DATAPROXY_URI
#540 opened Apr 9, 2025 by theferrit32
1
Add issue templates chore Changes that do not relate to a fix or feature and don't modify src or test files priority:medium Medium priority
#538 opened Apr 4, 2025 by korikuzma
1
Error translating allele to_spdi bug Something isn't working VRS translator Issues relating to translation of other expressions to/from VRS
#537 opened Apr 4, 2025 by jsstevenson
@theferrit32
2
VCF annotator should not check for GRCh38 VCF annotator Issues relating to VRS annotation of VCFs
#530 opened Mar 31, 2025 by david4096
1
support stdin in vcf annotator VCF annotator Issues relating to VRS annotation of VCFs
#529 opened Mar 31, 2025 by theferrit32
1
@theferrit32
1
Split out extras
#528 opened Mar 30, 2025 by david4096
2
Add compose documentation .md and other examples for using already-downloaded databases
#526 opened Mar 28, 2025 by theferrit32
1
@theferrit32
1
Support MAF ingestion/annotation priority:low Low priority
#512 opened Mar 1, 2025 by jsstevenson
2
Simplify pypi release action ci/cd Continuous integration and continuous delivery/deployment changes
#511 opened Feb 12, 2025 by korikuzma
1
Input type issues in using Translator to translate from VRS bug Something isn't working VRS translator Issues relating to translation of other expressions to/from VRS
#489 opened Feb 3, 2025 by jsstevenson
1
Fix HgvsTools.close() VRS translator Issues relating to translation of other expressions to/from VRS
#488 opened Feb 3, 2025 by jsstevenson
translator to/from methods should be public VRS translator Issues relating to translation of other expressions to/from VRS
#481 opened Jan 30, 2025 by jsstevenson
1
Decouple test_cnv_translator and test_allele_translator test Changes to test code only VRS translator Issues relating to translation of other expressions to/from VRS
#479 opened Jan 30, 2025 by jsstevenson
1
5
Require python >= 3.11 build Changes that affect the build system or dependencies priority:low Low priority
#477 opened Jan 25, 2025 by korikuzma
@korikuzma
5
Translator API/misc improvements enhancement New feature or request VRS translator Issues relating to translation of other expressions to/from VRS
#475 opened Dec 24, 2024 by jsstevenson
5 tasks
2
Remove ga4gh: prefix from VCF annotations? enhancement New feature or request question Further information is requested VCF annotator Issues relating to VRS annotation of VCFs
#470 opened Dec 9, 2024 by jsstevenson
5
Provide maturity annotation for classes and fields enhancement New feature or request
#466 opened Nov 15, 2024 by jsstevenson
@korikuzma
Bug in the developer installation instructions documentation Changes to documentation only Product Review requests from VRS product review
#457 opened Oct 31, 2024 by melissacline
2
ga4gh_identify adds digest properties in-place regardless of in_place argument bug Something isn't working question Further information is requested
#440 opened Jul 25, 2024 by jsstevenson
1
1
setup a list of unique variant examples for the basis of testing
#437 opened Jul 18, 2024 by larrybabb
@larrybabb
1
Provide way to stop normalization if the expression is obviously problematic (such as deletions in large gap/unknown regions)
#397 opened Apr 11, 2024 by larrybabb
5
Where and how to define the data_proxy interface 2.0-alpha Issues related to VRS 2.0-alpha branch technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#390 opened Apr 10, 2024 by jsstevenson
3
Redefine extra dependency groups 2.0-alpha Issues related to VRS 2.0-alpha branch technical debt A feature/requirement implemented in a sub-optimal way & must be re-written. Contrast to "cleanup"
#389 opened Apr 10, 2024 by jsstevenson
6
ProTip! What’s not been updated in a month: updated:<2025-03-14.