Several enhancement in gromacs engine

[Ericwang6]

1. Support upload type_file and index_file in GROMACS
2. Support restarting from .cpt in GROMACS calculation

[codecov-commenter]

Codecov Report

Merging #553 (3b2d414) into devel (f2397f3) will decrease coverage by 0.03%.
The diff coverage is 44.77%.

@@            Coverage Diff             @@
##            devel     #553      +/-   ##
==========================================
- Coverage   33.06%   33.03%   -0.04%     
==========================================
  Files          86       86              
  Lines       14716    14737      +21     
==========================================
+ Hits         4866     4868       +2     
- Misses       9850     9869      +19     

Impacted Files	Coverage Δ
dpgen/data/gen.py	51.04% <0.00%> (-0.17%)	⬇️
dpgen/dispatcher/ALI.py	0.00% <0.00%> (ø)
dpgen/generator/run.py	65.80% <40.13%> (-0.11%)	⬇️
dpgen/generator/lib/lammps.py	72.59% <87.50%> (ø)
dpgen/remote/decide_machine.py	100.00% <100.00%> (ø)

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