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Potentially new BA.1.1.1 sub-lineage with orf1ab: V6362I mutation in Cusco (Peru) #570

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@OrsonMM

Description

@OrsonMM

Description
New possible omicron sub-lineage with orf1ab: V6362I mutation proposed by the Group of SARS-CoV-2 Genomic Surveillance of the Instituto Nacional de Salud (INS) from Peru.

inside of clade Genomes of Canada carry aditional mutation in spike. S:D1146Y

Earliest sequence: 2021-12-16
KEN/SS7022/2021 (EPI_ISL_8587391)
Netherlands/NH-RIVM-77336/2021 (EPI_ISL_8392430)

Most recent sequence: 2022-03-17
Peru/CUS-INS-16223/2022 (EPI_ISL_11897860)

Countries circulating:
Peru (54), Canada (17), Belgium (1), Chile (2), Germany (2), Kenya (1), Netherlands (1), USA (1)

Evidence:

https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_94e8_204d0.json?c=gt-ORF1ab_4533,6362

new_linaje_propuesta

Peru

Peru_only

GENOMES:
genomes_peru.txt

COVSPECTRUM
new_linaje_propuesta_COV

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