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PK.1.1+S:K182E, N487D(11 seqs, >10% in Amazonas in February) #2951

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xz-keg opened this issue May 3, 2025 · 2 comments
Open

PK.1.1+S:K182E, N487D(11 seqs, >10% in Amazonas in February) #2951

xz-keg opened this issue May 3, 2025 · 2 comments

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@xz-keg
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xz-keg commented May 3, 2025

From sars-cov-2-variants/lineage-proposals#1877

It is a branch proposed long time ago that the original proposer @Outpfmance is no longer active, but it continues evolving and gets many additional spikes. Despite local, better designate it to track the diversity of SARS-2 variants.

JN.1.23.1 (S:K444R,S:Y453F,S:V1264L, S:N137K )> ORF1a:A138T (G677A),Orf1b:D54N(G13627A),S:R346T (G22599C)> S:F456V (T22928G) > S:L54S (T21723C), S:P85S(C21815T),

Query: T21723C,C21815T
Supplementary query: A22106G,A23021G,G28086A,-21723
No. of seqs: 31(Brazil-PA,AM)
Query for S:K182E+S:N487D: A22106G,A23021G,G28086A

First: EPI_ISL_19664327, PA, 2024-8-8
Latest: EPI_ISL_19852405, AM, 2025-2-24

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@FedeGueli
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+1 Amazonas , but to be noted that is absent from samples collected in March and uploaded from there

@xz-keg xz-keg changed the title JN.1.23.1 +ORF1b:D54N+S:R346T+S:F456V+S:L54S,P85S(31 seqs, Brazil)+S:K182E, N487D(10 seqs, >10% in Amazonas in February) JN.1.23.1 +ORF1b:D54N+S:R346T+S:F456V+S:L54S,P85S(32 seqs, Brazil)+S:K182E, N487D(11 seqs, >10% in Amazonas in February) May 7, 2025
@xz-keg
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xz-keg commented May 14, 2025

designated PK.1(S:R346T+F456V) and PK.1.1(for S:L54S,P85S)

@xz-keg xz-keg changed the title JN.1.23.1 +ORF1b:D54N+S:R346T+S:F456V+S:L54S,P85S(32 seqs, Brazil)+S:K182E, N487D(11 seqs, >10% in Amazonas in February) PK.1.1+S:K182E, N487D(11 seqs, >10% in Amazonas in February) May 14, 2025
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