JD.1.1.1/JN.1.1 recombinant(53 seqs, 4 countries, 11% Brazil)

[xz-keg]

From sars-cov-2-variants/lineage-proposals#1250

JD.1.1.1--JN.1.1

Breakpoint between 11043 and 11726

Additional mutations:
C2668T

C2668T from a JD.1.1.1 branch.
There are other XBB.1.5.102* seqs with C2668T, however they have other mutations, so excluded.

Some seqs do not have C2668T, however they're missing coverage on that place, no seq have 2668C.

GISAID query: A405G, C6896T, C11747T,C28958A
No. of seqs: 22(Denmark 1 Spain 3 Canada 1 Brazil 17)

First, EPI_ISL_18572639, Brazil, 2023-11-8
Latest: EPI_ISL_18803970, Canada, 2024-1-11

usher

[FedeGueli]

It appears very fast maybe founder effect maybe something else.

[FedeGueli]

ping @corneliusroemer i suggest fast designation of this one.

[FedeGueli]

41 now! ping @corneliusroemer

[FedeGueli]

over 7% of brazilian sampels after December 16. Note : Multiple states

[xz-keg]

Yeah +19 Brazil crazy.

[xz-keg]

15/137=11% in 2024-1 Brazil samples.

[FedeGueli]

ping @corneliusroemer this should be designated!

[Mike-Honey]

I think this was designated as XDR?

[xz-keg]

I think this was designated as XDR?

Yeah