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New CH.1.1 sublineage with S:T323K with advantage versus parental lineage spreading in UK (41 seqs) #1862

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@FedeGueli

Description

@FedeGueli

As expected where CH.1.1 reached early high prevalence (Uk,Aus,Den,SIngapore) there it has evolved in the most interesting ways.
While no CH.1.1 lineage seems able to compete with the XBBers army i want to propose here a new sublineage with a large advantage over parental CH.1.1.
it belongs to the big CH.1.1 branch with C21811T ( as CH.1.1.12, FK.1 and other important sublineages)

Defining mutations:
CH.1.1 >> >C21811T>C193T> A24772G >S:T323K ( C22530A)

Tree:

Schermata 2023-04-08 alle 22 24 26
https://nextstrain.org/fetch/genome.ucsc.edu/trash/ct/subtreeAuspice1_genome_20f6c_1b8830.json?label=id:node_8158277

Gisaid query: C21811T,C193T, A24772G , C22530A

Sequences: 37 Gisaid (41 on Usher)
EPI_ISL_16484346, EPI_ISL_16515651, EPI_ISL_16978272,
EPI_ISL_16996419, EPI_ISL_17029562, EPI_ISL_17030854,
EPI_ISL_17097290, EPI_ISL_17098497, EPI_ISL_17098513,
EPI_ISL_17098525-17098526, EPI_ISL_17165076, EPI_ISL_17178506,
EPI_ISL_17178508, EPI_ISL_17178613, EPI_ISL_17198927,
EPI_ISL_17233516, EPI_ISL_17241840, EPI_ISL_17242167,
EPI_ISL_17245519, EPI_ISL_17245726, EPI_ISL_17245978,
EPI_ISL_17256971, EPI_ISL_17347504, EPI_ISL_17347509,
EPI_ISL_17347514, EPI_ISL_17363285, EPI_ISL_17372861,
EPI_ISL_17372885, EPI_ISL_17372902, EPI_ISL_17372979,
EPI_ISL_17373034, EPI_ISL_17382351, EPI_ISL_17412318,
EPI_ISL_17416768, EPI_ISL_17423304, EPI_ISL_17423366,

Countries:
Schermata 2023-04-08 alle 22 27 05

Growth advantage versus parental lineage:
Schermata 2023-04-08 alle 22 18 51
https://cov-spectrum.org/explore/United%20Kingdom/AllSamples/Past3M/variants?nextcladePangoLineage=CH.1.1*&aaMutations1=S%3AT323K&nextcladePangoLineage1=CH.1.1*&analysisMode=CompareToBaseline&

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