Closed
Description
- Find a Python file we touch in
Implement a subset of the Common Workflow Language. #47Implement a subset of the Common Workflow Language galaxyproject/galaxy#12909 or [WIP] Implement conditionals. #123 - Edit https://github.com/galaxyproject/galaxy/blob/dev/setup.cfg#L24 to remove the
check_untyped_defs = Falsefrom underneath that filename tox -e mypy- Fix/enhance types ; send PR to https://github.com/galaxyproject/galaxy/ against the
devbranch - Repeat from 1 with another file
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lib/galaxy/config/__init__.py -
lib/galaxy/datatypes/data.py -
lib/galaxy/job_execution/output_collect.py -
lib/galaxy/jobs/__init__.py -
lib/galaxy/jobs/command_factory.py -
lib/galaxy/jobs/runners/local.py -
lib/galaxy/managers/collections.py -
lib/galaxy/managers/collections_util.py -
lib/galaxy/managers/histories.py -
lib/galaxy/managers/tools.py -
lib/galaxy/managers/workflows.py -
lib/galaxy/metadata/__init__.py -
lib/galaxy/model/__init__.py -
lib/galaxy/model/dataset_collections/builder.py -
lib/galaxy/model/dataset_collections/matching.py -
lib/galaxy/model/dataset_collections/registry.py -
lib/galaxy/model/dataset_collections/type_description.py -
lib/galaxy/model/dataset_collections/types/__init__.py -
lib/galaxy/model/dataset_collections/types/list.py -
lib/galaxy/model/dataset_collections/types/paired.py -
lib/galaxy/schema/schema.py -
lib/galaxy/tool_util/client/staging.py -
lib/galaxy/tool_util/cwl/parser.py -
lib/galaxy/tool_util/cwl/representation.py -
lib/galaxy/tool_util/cwl/schema.py -
lib/galaxy/tool_util/cwl/util.py -
lib/galaxy/tool_util/output_checker.py -
lib/galaxy/tool_util/parser/cwl.py -
lib/galaxy/tool_util/parser/factory.py -
lib/galaxy/tool_util/parser/interface.py -
lib/galaxy/tool_util/parser/output_objects.py -
lib/galaxy/tool_util/parser/yaml.py -
lib/galaxy/tools/__init__.py -
lib/galaxy/tools/actions/__init__.py -
lib/galaxy/tools/evaluation.py -
lib/galaxy/tools/execute.py -
lib/galaxy/tools/parameters/basic.py -
lib/galaxy/tools/parameters/grouping.py -
lib/galaxy/tools/parameters/wrapped.py -
lib/galaxy/tools/wrappers.py -
lib/galaxy/util/compression_utils.py -
lib/galaxy/webapps/galaxy/api/tools.py -
lib/galaxy/webapps/galaxy/api/workflows.py -
lib/galaxy/webapps/galaxy/controllers/tool_runner.py -
lib/galaxy/webapps/galaxy/services/dataset_collections.py -
lib/galaxy/workflow/modules.py -
lib/galaxy/workflow/run.py -
lib/galaxy/workflow/run_request.py -
lib/galaxy/workflow/steps.py -
lib/galaxy_test/api/test_dataset_collections.py -
lib/galaxy_test/api/test_tools.py -
lib/galaxy_test/driver/driver_util.py -
test/integration/test_upload_configuration_options.py -
test/unit/app/jobs/test_command_factory.py -
test/unit/app/jobs/test_runner_local.py -
test/unit/app/managers/test_HistoryManager.py -
test/unit/tool_util/test_parsing.py
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