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Centers for Disease Control and Prevention

CDC's collaborative software projects to protect America from health, safety, and security threats, both foreign and in the U.S.

CDCGov Organization

This is CDC's GitHub organization for collaborating on open source projects. More information on CDC's open collaboration projects is available at openCDC.

Check out our Open Source Practices and please suggest any ideas for improvement by sending a pull request.

Check out a portal of all the projects hosted in the CDCGov domain. (thanks to Tony Boyles)

If you would like to create a new project, please complete this form logging in with your CDC credentials.

If you would like to join the CDCGov organization, or would like to suggest some others to join, please drop an issue into the template repo.

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  1. cdcgov.github.io cdcgov.github.io Public

    Portal site for all CDCgov projects, https://cdcgov.github.io

    HTML 24 31

  2. template template Public template

    Template repository with rules, practices, and privacy, license, records notices to help people use the CDCgov GitHub organization.

    38 49

Repositories

Showing 10 of 462 repositories
  • phoenix Public

    🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

    CDCgov/phoenix’s past year of commit activity
    Python 73 Apache-2.0 30 15 0 Updated May 30, 2025
  • tostadas Public

    🧬 💻 TOSTADAS → Toolkit for Open Sequence Triage, Annotation and DAtabase Submission

    CDCgov/tostadas’s past year of commit activity
    Python 27 Apache-2.0 13 16 2 Updated May 30, 2025
  • dibbs-ecr-viewer Public

    DIBBS eCR Viewer

    CDCgov/dibbs-ecr-viewer’s past year of commit activity
    HTML 6 CC0-1.0 1 99 12 Updated May 30, 2025
  • eMKF Public
    CDCgov/eMKF’s past year of commit activity
    SAS 2 Apache-2.0 3 0 0 Updated May 30, 2025
  • Opioid_SUD_MHI_MedCodes Public

    Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

    CDCgov/Opioid_SUD_MHI_MedCodes’s past year of commit activity
    Python 7 7 0 0 Updated May 30, 2025
  • CDCgov/cfa-epinow2-pipeline’s past year of commit activity
    R 11 Apache-2.0 7 38 9 Updated May 30, 2025
  • CDCgov/NEDSS-Modernization’s past year of commit activity
    Java 20 4 0 6 Updated May 30, 2025
  • RecordLinker Public

    The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.

    CDCgov/RecordLinker’s past year of commit activity
    Python 6 Apache-2.0 2 23 4 Updated May 30, 2025
  • DynODE Public

    CDC/CFA/Predict/Scenarios ODE Modeling Framework

    CDCgov/DynODE’s past year of commit activity
    Python 8 Apache-2.0 2 39 (1 issue needs help) 0 Updated May 30, 2025
  • CDCgov/abm-python-wrappers’s past year of commit activity
    Python 0 Apache-2.0 2 4 1 Updated May 30, 2025