Repositories list

• RecordLinker

  Public
  The RecordLinker is a service that links records from two datasets based on a set of common attributes. The service is designed to be used in a variety of public health contexts, such as linking patient records from different sources or linking records from different public health surveillance systems.

  pythonsqlalchemyfastapi

  Python

  •

  Apache License 2.0

  •2•4•48•5•Updated Apr 17, 2025Apr 17, 2025

• phoenix

  Public
  🔥🐦🔥PHoeNIx: a platform agnostic pipeline for healthcare-associated and antimicrobial resistant pathogens

  Python

  •

  Apache License 2.0

  •28•71•14•1•Updated Apr 17, 2025Apr 17, 2025

• wastewater-informed-covid-forecasting

  Public
  Wastewater-informed COVID-19 forecasting models submitted to the COVID-19 Forecast Hub

  R

  •

  Apache License 2.0

  •13•47•97•5•Updated Apr 17, 2025Apr 17, 2025

• prime-simplereport

  Public
  SimpleReport is a fast, free, and easy way for COVID-19 testing facilities to report results to public health departments.

  reactjsterraformgraphql+ 1spring-boot

  Java

  •

  Creative Commons Zero v1.0 Universal

  •65•60•168•20•Updated Apr 17, 2025Apr 17, 2025

• cfa-epinow2-pipeline

  Public
  R

  •

  Apache License 2.0

  •7•11•25•8•Updated Apr 17, 2025Apr 17, 2025

• NEDSS-Modernization

  Public
  Java

  •4•20•0•7•Updated Apr 16, 2025Apr 16, 2025

• eMKF

  Public
  SAS

  •

  Apache License 2.0

  •3•2•0•0•Updated Apr 16, 2025Apr 16, 2025

• prime-reportstream

  Public
  ReportStream is a public intermediary tool for delivery of data between different parts of the healthcare ecosystem.

  fhirpublic-healthcivic-tech+ 1hl7

  Kotlin

  •

  Creative Commons Zero v1.0 Universal

  •45•79•1.2k•150•Updated Apr 16, 2025Apr 16, 2025

• covid19-forecast-hub

  Public
  A repository run by the US CDC to collect forecasts of weekly incident COVID-19 hospital admissions.

  R

  •

  Apache License 2.0

  •18•14•12•0•Updated Apr 16, 2025Apr 16, 2025

• Opioid_SUD_MHI_MedCodes

  Public
  Code to flag ICD-10-CM codes related to opioid involvement, substance use disorder, and mental health issues in structured hospital data

  Python

  •7•7•0•0•Updated Apr 16, 2025Apr 16, 2025

• dibbs-ecr-refiner

  Public
  Python

  •

  Apache License 2.0

  •0•2•16•1•Updated Apr 16, 2025Apr 16, 2025

• NEDSS-Helm

  Public
  This repository is created for NEDSS Helm charts.

  Smarty

  •

  Apache License 2.0

  •4•2•0•13•Updated Apr 16, 2025Apr 16, 2025

• cfa-immunization-uptake-projection

  Public
  Python

  •

  Apache License 2.0

  •3•2•10•1•Updated Apr 16, 2025Apr 16, 2025

• dibbs-ecr-viewer

  Public
  HTML

  •

  Creative Commons Zero v1.0 Universal

  •1•3•97•6•Updated Apr 16, 2025Apr 16, 2025

• lib-cloud-proxy-go

  Public
  Go

  •2•1•0•3•Updated Apr 16, 2025Apr 16, 2025

• ixa-epi-isolation

  Public
  Rust

  •

  Apache License 2.0

  •2•1•23•7•Updated Apr 16, 2025Apr 16, 2025

• cdc-open-viz

  Public
  CDC OpenViz is a library of React packages for data visualization.

  reactvisualizationdata+ 1visualization-library

  TypeScript

  •

  Apache License 2.0

  •27•43•0•11•Updated Apr 16, 2025Apr 16, 2025

• NEDSS-NNDSS-Case-Notifications

  Public
  Java

  •

  Apache License 2.0

  •1•0•0•3•Updated Apr 16, 2025Apr 16, 2025

• data-exchange-processing-status

  Public
  The Public Health Data Operations (PHDO) Processing Status API (PS API) was developed to provide visibility into the status and performance of file uploads. The PS API provides the ability to receive reports about the status of uploads, and to develop custom queries to ask detailed questions about the data being uploaded and processed.

  Kotlin

  •

  Apache License 2.0

  •3•3•0•6•Updated Apr 16, 2025Apr 16, 2025

• cfa_azure

  Public
  pythonazureazure-batch+ 2azure-container-registryazure-blob-storage

  Python

  •

  Apache License 2.0

  •6•9•2•0•Updated Apr 16, 2025Apr 16, 2025

• dibbs-query-connector

  Public
  A FHIR client allowing public health agencies to query health care organizations directly or via a TEFCA QHIN

  TypeScript

  •

  Creative Commons Zero v1.0 Universal

  •4•6•48•5•Updated Apr 16, 2025Apr 16, 2025

• NEDSS-DataReporting

  Public
  Data Near Real Time Reporting micro services for Modernized NBS System

  TSQL

  •

  Apache License 2.0

  •4•1•0•8•Updated Apr 16, 2025Apr 16, 2025

• dynode-web

  Public
  TypeScript

  •

  Apache License 2.0

  •1•1•24•3•Updated Apr 16, 2025Apr 16, 2025

• spyne

  Public
  Python

  •6•1•0•4•Updated Apr 16, 2025Apr 16, 2025

• dibbs-aws

  Public template
  HCL

  •

  Creative Commons Zero v1.0 Universal

  •2•3•0•1•Updated Apr 16, 2025Apr 16, 2025

• irma-core

  Public
  A tool to aid virus sequencing and accelerate IRMA.

  bioinformaticsncird-idcdc-influenza-division

  Rust

  •

  Apache License 2.0

  •0•6•0•0•Updated Apr 16, 2025Apr 16, 2025

• data-exchange-upload

  Public
  The Public Health Data Operations (PHDO) Upload service provides secure ingestion, delivery, and observability of public health files from data senders to CDC program target locations via Application Programming Interfaces (APIs).

  Go

  •

  Apache License 2.0

  •6•9•42•11•Updated Apr 16, 2025Apr 16, 2025

• NEDSS-DataIngestion

  Public
  Data Ingestion for Modernization of NEDSS Project by Enquizit

  Java

  •

  Apache License 2.0

  •5•6•0•4•Updated Apr 16, 2025Apr 16, 2025

• pyrenew-hew

  Public
  Models and infrastructure for forecasting COVID-19 and Flu hospitalizations using wastewater data with PyRenew

  Python

  •

  Apache License 2.0

  •3•9•79•6•Updated Apr 16, 2025Apr 16, 2025

• MIRA-NF

  Public
  quality-controlnextflowgenome-annotation+ 9irmainfluenzagenome-assemblynf-corenextflow-pipelinesars-cov-2rsv+ 2

  Nextflow

  •

  MIT License

  •6•7•2•0•Updated Apr 16, 2025Apr 16, 2025