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Implement general YAML to command line option functionality #8

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@fungs

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@fungs

Hi @michaelbarton,

I propose to write a biobox YAML to argparse object parser which seems to be the new Python standard option parsing module (https://docs.python.org/3/library/argparse.html). docopt gives a nice start but IMO for more complex examples going from the object to the help message is better than the other way around.

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