Search results

Error - Found multiple entries with exon_id

bug

Status: Open.

#360 In bcgsc/mavis;

· monicarojasp opened on Apr 21, 2025

How to run mavis annotate directly?

bug

Status: Open.

#359 In bcgsc/mavis;

· Weiyifan opened on Mar 28, 2024

Validate step not aligning reads that start with a chr to evidence that don't have a chr

bug

Status: Open.

#355 In bcgsc/mavis;

· calchoo opened on Aug 16, 2023

 ·  

v3.1.2

ValidationError: Additional properties are not allowed ('summary.cluster_radius' was unexpected)

Status: Open.

#345 In bcgsc/mavis;

· min-codes opened on Dec 14, 2022

snakemake.exceptions.WorkflowError: Config file is not valid JSON or YAML

bug

documentation

question

Status: Open.

#335 In bcgsc/mavis;

· mattdoug604 opened on Oct 14, 2022

Unused variables in validation module

enhancement

Status: Open.

#334 In bcgsc/mavis;

· zhemingfan opened on Aug 15, 2022

 ·  

v3.1.0

Docker Validation Error - tutorial full

bug

Status: Open.

#332 In bcgsc/mavis;

· husamia opened on May 27, 2022

Integrate CHM13-T2T support

enhancement

Status: Open.

#324 In bcgsc/mavis;

· zhemingfan opened on Apr 12, 2022

 ·  

v3.1.0

Add compression step to MAVIS snakemake v3

enhancement

performanceTo do with improving speed or resource usageTo do with improving speed or resource usage

Status: Open.

#323 In bcgsc/mavis;

· creisle opened on Apr 6, 2022

 ·  

v3.1.0

Integration information from fusion calls with transcriptomic data

enhancement

Status: Open.

#322 In bcgsc/mavis;

· zhemingfan opened on Mar 8, 2022

Straglr conversion support to json for MAVIS annotation

enhancement

long read supportSupport for long read sequence data, e.g. from Oxford Nanopore or PacBioSupport for long read sequence data, e.g. from Oxford Nanopore or PacBio

SV callerTickets related to support for inputs from different SV callersTickets related to support for inputs from different SV callers

Status: Open.

#317 In bcgsc/mavis;

· sarahdada opened on Mar 2, 2022

 ·  

v3.1.0

Modify DGV annotations to more general tab format to support complex SVs

enhancement

long read supportSupport for long read sequence data, e.g. from Oxford Nanopore or PacBioSupport for long read sequence data, e.g. from Oxford Nanopore or PacBio

reference filesTo do with generating the reference input filesTo do with generating the reference input files

Status: Open.

#307 In bcgsc/mavis;

· zhemingfan opened on Feb 9, 2022

 ·  

v3.1.0