ci: upgrade cibuildwheel #2014
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| name: Tests and Linting | |
| on: | |
| workflow_dispatch: | |
| pull_request: | |
| push: | |
| branches: [master] | |
| env: | |
| UV_INDEX_STRATEGY: "unsafe-first-match" | |
| UV_EXTRA_INDEX_URL: "https://download.pytorch.org/whl/cpu" | |
| PIP_EXTRA_INDEX_URL: "https://download.pytorch.org/whl/cpu" | |
| UV_SYSTEM_PYTHON: 1 | |
| BRANCH_NAME: ${{ github.head_ref || github.ref_name }} | |
| jobs: | |
| linting: | |
| name: Linting | |
| if: github.event_name == 'pull_request' | |
| runs-on: ubuntu-22.04 | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| # requites to grab the history of the PR | |
| fetch-depth: 0 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| cache: 'pip' | |
| - uses: pre-commit/[email protected] | |
| with: | |
| extra_args: --color=always --from-ref ${{ github.event.pull_request.base.sha }} --to-ref ${{ github.event.pull_request.head.sha }} | |
| pytest: | |
| name: Pytest | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Cache downloaded resources | |
| uses: actions/cache@v3 | |
| with: | |
| path: ~/.data/ | |
| key: resources | |
| - name: Set up Java | |
| uses: actions/setup-java@v2 | |
| with: | |
| distribution: "temurin" # See 'Supported distributions' for available options | |
| java-version: "8" | |
| - name: Set up Python | |
| uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - name: Install dependencies | |
| run: pip install -e ".[dev]" | |
| if: matrix.python-version != '3.9' && matrix.python-version != '3.10' && matrix.python-version != '3.11' && matrix.python-version != '3.12' | |
| - name: Install dependencies | |
| run: pip install -e ".[dev,setup]" | |
| if: matrix.python-version == '3.9' | |
| - name: Install dependencies | |
| # skip ML tests for 3.10 and 3.11 | |
| run: pip install -e ".[dev-no-ml]" | |
| if: matrix.python-version == '3.10' || matrix.python-version == '3.11' || matrix.python-version == '3.12' | |
| - name: Test with Pytest on Python ${{ matrix.python-version }} | |
| env: | |
| UMLS_API_KEY: ${{ secrets.UMLS_API_KEY }} | |
| run: coverage run -m pytest --ignore tests/test_docs.py | |
| if: matrix.python-version != '3.9' | |
| - name: Test with Pytest on Python ${{ matrix.python-version }} | |
| env: | |
| UMLS_API_KEY: ${{ secrets.UMLS_API_KEY }} | |
| run: coverage run -m pytest | |
| if: matrix.python-version == '3.9' | |
| - name: Upload coverage data | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: coverage-data-${{ matrix.python-version }} | |
| path: .coverage.* | |
| if-no-files-found: ignore | |
| include-hidden-files: true | |
| coverage: | |
| name: Coverage | |
| needs: pytest | |
| uses: aphp/foldedtensor/.github/workflows/coverage.yml@main | |
| with: | |
| base-branch: master | |
| coverage-data-pattern: coverage-data-* | |
| coverage-report: coverage.txt | |
| coverage-badge: coverage.svg | |
| coverage-branch: coverage | |
| documentation: | |
| name: Documentation | |
| runs-on: ubuntu-latest | |
| # Main docs are built in another workflow, we don't have to test them outside of PR | |
| if: github.event_name == 'pull_request' || github.event_name == 'workflow_dispatch' | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: 3.9 | |
| cache: 'pip' | |
| - name: Install dependencies | |
| run: pip install -e ".[docs]" | |
| - name: Set up Git | |
| run: | | |
| git config user.name ${{ github.actor }} | |
| git config user.email ${{ github.actor }}@users.noreply.github.com | |
| echo Current branch: $BRANCH_NAME | |
| - name: Build documentation | |
| run: | | |
| mike deploy --no-redirect --rebase --update-aliases $BRANCH_NAME latest | |
| mike set-default $BRANCH_NAME | |
| - name: Put content of gh-pages to public folder | |
| run: rm -rf public && mkdir public && git archive gh-pages | tar -x -C ./public/ | |
| - name: Set up Vercel | |
| run: npm install --global vercel@latest | |
| - name: Pull Vercel environment | |
| run: vercel pull --yes --environment=preview --token=${{ secrets.VERCEL_TOKEN }} | |
| - name: Create new vercel project linked to this branch | |
| run: vercel project add edsnlp-$BRANCH_NAME --token=${{ secrets.VERCEL_TOKEN }} | |
| - name: Link public folder to the (maybe) new vercel project | |
| run: vercel link --cwd public --project edsnlp-$BRANCH_NAME --yes --token=${{ secrets.VERCEL_TOKEN }} | |
| - name: Deploy to Vercel | |
| run: vercel deploy public/ --yes --token=${{ secrets.VERCEL_TOKEN }} --archive=tgz --prod > deployment-url.txt | |
| - name: Post the documentation link | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| run: | | |
| slugify () { | |
| echo "$1" | iconv -c -t ascii//TRANSLIT | sed -E 's/[^a-zA-Z0-9-]+//g' | tr A-Z a-z | |
| } | |
| RAW_PROJECT_NAME="edsnlp-$BRANCH_NAME" | |
| URL=https://$(slugify "$RAW_PROJECT_NAME").vercel.app/ | |
| COMMENT_BODY="## Docs preview URL\n\n$URL\n\n" | |
| HEADER="Authorization: token $GITHUB_TOKEN" | |
| PR_COMMENTS_URL="https://api.github.com/repos/${{ github.repository }}/issues/${{ github.event.pull_request.number }}/comments" | |
| # Fetch existing comments to find if one from this workflow already exists | |
| COMMENTS=$(curl -s -H "$HEADER" "$PR_COMMENTS_URL") | |
| COMMENT_ID=$(echo "$COMMENTS" | jq -r '.[] | select(.user.login == "github-actions[bot]" and (.body | startswith("## Docs preview URL"))) | .id') | |
| # Check if we have a comment ID, if so, update it, otherwise create a new one | |
| if [[ "$COMMENT_ID" ]]; then | |
| # Update existing comment | |
| curl -s -X PATCH -H "$HEADER" -H "Content-Type: application/json" -d "{\"body\": \"$COMMENT_BODY\"}" "https://api.github.com/repos/${{ github.repository }}/issues/comments/$COMMENT_ID" | |
| else | |
| # Post new comment | |
| curl -s -X POST -H "$HEADER" -H "Content-Type: application/json" -d "{\"body\": \"$COMMENT_BODY\"}" "$PR_COMMENTS_URL" | |
| fi | |
| if [ $status -ne 0 ]; then | |
| exit $status | |
| fi | |
| simple-installation: | |
| name: Simple installation | |
| runs-on: ubuntu-22.04 | |
| strategy: | |
| fail-fast: true | |
| matrix: | |
| python-version: ["3.7", "3.8", "3.9", "3.10", "3.11", "3.12"] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| cache: 'pip' | |
| - run: echo WEEK=$(date +%V) >>$GITHUB_ENV | |
| shell: bash | |
| - name: Install library | |
| run: | | |
| pip install ".[ml]" pytest | |
| pytest tests/pipelines/test_pipelines.py |