pyRona-0.3.6

Changes made in version 0.3.6

• Fixed a broken help link

pyRona-0.3.5

Changes made in version 0.3.5

• Adds a new feature: RONA maps
  • To use it, just add the option -map with a path to where you want to save the map, such as ~/my_RONA_map.png
  • In order to use this feature, the dependency cartopy is required.
  • The manual now contains instructions on installing cartopy depending on your OS
    • Instructions for OSX are still missing. Help, anyone?
  • For now, the options assumes that the first variable in the environmental file is "Longitude" and the second one is "Latitude"

pyRona-0.3.4

Changes made in version 0.3.4

• Immutables option is no longer on by default
• Improved help text of the immutables option
• Improved handling of LFMM population data (as opposed to individual data)
• Tests altered to conform to new options

pyRona-0.3.3

Changes made in version 0.3.3

• Better handling of individual plots
• Better PEP8 conformance

pyRona-0.3.1

Changes made in version 0.3.1

• Corrects a bug in the installation of the R script LFMM_workflow.R
• Better PEP8 conformance

pyRona-0.3.0

Changes made in version 0.3.0

• pyRona can now use LFMM results as an input to calculate RONA
  • The test suite was also increased to match the changes

pyRona-0.2.0

Changes made in version 0.2.0

• Major code re-organization
• Can now be installed via setup.py
• Pypi submission
• Adds unit tests
• Travis-CI integration
• Proper documentation is started

pyRona-0.1.3

This release adds:

• Autosave plots instead of interactive (which allows for a lot better automation)
• Bugfix with arg.immutables argument.

pyRona-0.1.2

This release adds:

• Better PEP8 conformance
• Weighted R² means in the summary (when requested)
• Better label handling in the plots
• Option to choose which covariates are immutable and skip them

pyRona-0.1.1

Changelog:

• Added a new line to the summary (Number of SNPs associated with each covariate)
• Can now parse multiple outputs from BayPass and not only for the MCMC_core model.