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Implemented VoxelMorph #7178

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Merged
merged 18 commits into from
Nov 3, 2023
Merged

Implemented VoxelMorph #7178

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fc220e1
Implemented voxelmorph and passed coding style check
kvttt Nov 1, 2023
a65b9ae
Merge branch 'dev' into 5484-voxelmorph-impl
kvttt Nov 1, 2023
bf69c7c
Added and passed unittest, fixed static type test error
kvttt Nov 1, 2023
028fbe5
Merge remote-tracking branch 'origin/5484-voxelmorph-impl' into 5484-…
kvttt Nov 1, 2023
ecc1020
Merge branch 'dev' into 5484-voxelmorph-impl
kvttt Nov 1, 2023
178c9be
Fixed error caused by jit
kvttt Nov 1, 2023
4f2faaf
Fixed code format issue
kvttt Nov 1, 2023
7e1736e
Previous tests failed (probably) due to OOM. Removed testing cases fo…
kvttt Nov 2, 2023
0ef81ac
Previous tests indeed failed due to oom, changed the network in test_…
kvttt Nov 2, 2023
38ccf33
Updated docs and added more explanations in the code
kvttt Nov 2, 2023
c3e7e5f
Merge branch 'dev' into 5484-voxelmorph-impl
kvttt Nov 2, 2023
cb91654
Renamed int_steps to integration_steps, explained how integration wor…
kvttt Nov 2, 2023
a32e98c
Merge branch 'dev' into 5484-voxelmorph-impl
kvttt Nov 2, 2023
b7635e8
Merge branch 'dev' into 5484-voxelmorph-impl
kvttt Nov 2, 2023
37d4b45
Decoupled voxelmorph (the framework) from voxelmorph (the unet subnet…
kvttt Nov 2, 2023
6cd223b
fixes docstring/type format
wyli Nov 3, 2023
73ddabf
Merge remote-tracking branch 'upstream/dev' into 5484-voxelmorph-impl
wyli Nov 3, 2023
ab9f595
update test case
wyli Nov 3, 2023
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12 changes: 12 additions & 0 deletions docs/source/networks.rst
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Expand Up @@ -710,6 +710,18 @@ Nets
.. autoclass:: Quicknat
:members:

`VoxelMorph`
~~~~~~~~~~~~
.. autoclass:: VoxelMorphUNet
:members:

.. autoclass:: voxelmorphunet
:members:

.. autoclass:: VoxelMorph
:members:

.. autoclass:: voxelmorph

Utilities
---------
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1 change: 1 addition & 0 deletions monai/networks/nets/__init__.py
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Expand Up @@ -111,3 +111,4 @@
from .vit import ViT
from .vitautoenc import ViTAutoEnc
from .vnet import VNet
from .voxelmorph import VoxelMorph, VoxelMorphUNet
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