Workflow file for this run
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| name: Build, Publish and Release PyPI and Conda Packages | |
| on: | |
| release: | |
| types: [created] | |
| jobs: | |
| deploy: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - name: Set up Python | |
| uses: actions/setup-python@v2 | |
| with: | |
| python-version: '3.x' | |
| - name: Build package | |
| run: python setup.py sdist bdist_wheel | |
| - name: Set environment variables | |
| run: | | |
| echo "tar_file=$(ls dist/*.tar.gz)" >> $GITHUB_ENV | |
| echo "whl_file=$(ls dist/*.whl)" >> $GITHUB_ENV | |
| - name: Publish to PyPI | |
| uses: pypa/gh-action-pypi-publish@release/v1 | |
| with: | |
| user: __token__ | |
| password: ${{ secrets.PYPI_API_TOKEN }} | |
| - name: Get Release | |
| id: get_release | |
| uses: bruceadams/[email protected] | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| - name: Upload Release Asset (.tar.gz) | |
| uses: actions/upload-release-asset@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ steps.get_release.outputs.upload_url }} | |
| asset_path: ${{ env.tar_file }} | |
| asset_name: $(basename ${{ env.tar_file }}) | |
| asset_content_type: application/gzip | |
| - name: Upload Release Asset (.whl) | |
| uses: actions/upload-release-asset@v1 | |
| env: | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| with: | |
| upload_url: ${{ steps.get_release.outputs.upload_url }} | |
| asset_path: ${{ env.whl_file }} | |
| asset_name: $(basename ${{ env.whl_file }}) | |
| asset_content_type: application/zip | |
| build: | |
| needs: deploy | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout code | |
| uses: actions/checkout@v2 | |
| - name: Setup Conda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: allelefinder_env | |
| python-version: 3.9.12 | |
| auto-activate-base: false | |
| channels: olcbioinformatics,bioconda,conda-forge | |
| - name: Install Conda build | |
| run: conda install -y conda-build | |
| - name: Get version and download source code | |
| run: | | |
| echo "VERSION=${GITHUB_REF#refs/tags/}" >> $GITHUB_ENV # Extract the version from the GitHub tag | |
| wget https://github.com/OLC-Bioinformatics/AlleleFinder/archive/$VERSION.tar.gz | |
| - name: Calculate hash | |
| run: | | |
| echo "HASH=$(sha256sum $VERSION.tar.gz | awk '{ print $1 }')" >> $GITHUB_ENV | |
| - name: Update meta.yaml | |
| run: | | |
| sed -i "s/{{ version }}/$VERSION/g" recipes/meta.yaml | |
| sed -i "s|{{ url }}|https://github.com/OLC-Bioinformatics/AlleleFinder/archive/$VERSION.tar.gz|g" recipes/meta.yaml | |
| sed -i "s/{{ sha256 }}/$HASH/g" recipes/meta.yaml | |
| - name: Build Conda package | |
| run: | | |
| conda build . | |
| - name: Upload Conda package | |
| uses: actions/upload-artifact@v2 | |
| with: | |
| name: allelefinder | |
| path: $CONDA_BLD_PATH/noarch/allelefinder-*.tar.bz2 | |
| - name: Install anaconda-client | |
| run: conda install -y anaconda-client | |
| - name: Upload package to olcbioinformatics | |
| run: | | |
| anaconda -t ${{ secrets.OLCBIOINFORMATICS_ANACONDA_API_TOKEN }} upload -u olcbioinformatics $CONDA_BLD_PATH/noarch/allelefinder-*.tar.bz2 | |
| - name: Upload package to adamkoziol | |
| run: | | |
| anaconda -t ${{ secrets.ADAMKOZIOL_ANACONDA_API_TOKEN }} upload -u adamkoziol $CONDA_BLD_PATH/noarch/allelefinder-*.tar.bz2 |