Workflow file for this run
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| name: Build, Publish and Release PyPI and Conda Packages | ||
| on: | ||
| release: | ||
| types: [created] | ||
| jobs: | ||
| deploy: | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: Set up Python | ||
| uses: actions/setup-python@v2 | ||
| with: | ||
| python-version: '3.x' | ||
| - name: Install dependencies | ||
| run: | | ||
| python -m pip install --upgrade pip | ||
| pip install setuptools wheel twine | ||
| - name: Build package | ||
| run: python setup.py sdist bdist_wheel | ||
| - name: Set environment variables | ||
| run: | | ||
| echo "tar_file=$(ls dist/*.tar.gz)" >> $GITHUB_ENV | ||
| echo "whl_file=$(ls dist/*.whl)" >> $GITHUB_ENV | ||
| - name: Calculate hash | ||
| run: | | ||
| echo "$(shasum -a 256 dist/*.tar.gz | cut -d ' ' -f 1)" > hash.txt | ||
| - name: Publish to PyPI | ||
| uses: pypa/gh-action-pypi-publish@release/v1 | ||
| with: | ||
| user: __token__ | ||
| password: ${{ secrets.PYPI_API_TOKEN }} | ||
| - name: Get Release | ||
| id: get_release | ||
| uses: bruceadams/[email protected] | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| - name: Upload Release Asset (.tar.gz) | ||
| uses: actions/upload-release-asset@v1 | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| with: | ||
| upload_url: ${{ steps.get_release.outputs.upload_url }} | ||
| asset_path: ${{ env.tar_file }} | ||
| asset_name: package.tar.gz | ||
| asset_content_type: application/gzip | ||
| - name: Upload Release Asset (.whl) | ||
| uses: actions/upload-release-asset@v1 | ||
| env: | ||
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | ||
| with: | ||
| upload_url: ${{ steps.get_release.outputs.upload_url }} | ||
| asset_path: ${{ env.whl_file }} | ||
| asset_name: package.whl | ||
| asset_content_type: application/zip | ||
| build: | ||
| needs: deploy | ||
| runs-on: ubuntu-latest | ||
| steps: | ||
| - name: Checkout code | ||
| uses: actions/checkout@v2 | ||
| - name: Setup Conda | ||
| uses: conda-incubator/setup-miniconda@v2 | ||
| with: | ||
| activate-environment: allelefinder_env | ||
| python-version: 3.9.12 | ||
| auto-activate-base: false | ||
| channels: | ||
| - olcbioinformatics | ||
| - bioconda | ||
| - conda-forge | ||
| - name: Install Conda build | ||
| run: conda install -y conda-build | ||
| - name: Read hash | ||
| id: read_hash | ||
| run: | | ||
| echo "HASH=$(cat hash.txt)" >> $GITHUB_ENV | ||
| - name: Update meta.yaml | ||
| run: | | ||
| sed -i "s/{{ version }}/$(echo ${GITHUB_REF#refs/tags/})/g" recipes/meta.yaml | ||
| sed -i "s|{{ url }}|https://pypi.io/packages/source/a/allelefinder/allelefinder-$(echo ${GITHUB_REF#refs/tags/}).tar.gz|g" recipes/meta.yaml | ||
| sed -i "s/{{ sha256 }}/${{ env.HASH }}/g" recipes/meta.yaml | ||
| - name: Build Conda package | ||
| run: | | ||
| conda build . | ||
| - name: Upload Conda package | ||
| uses: actions/upload-artifact@v2 | ||
| with: | ||
| name: allelefinder | ||
| path: $CONDA_BLD_PATH/noarch/allelefinder-*.tar.bz2 | ||
| - name: Install anaconda-client | ||
| run: conda install -y anaconda-client | ||
| - name: Upload package to olcbioinformatics | ||
| run: | | ||
| anaconda -t ${{ secrets.OLCBIOINFORMAT_ANACONDA_API_TOKEN }} upload -u olcbioinformatics $CONDA_BLD_PATH/noarch/allelefinder-*.tar.bz2 | ||
| - name: Upload package to adamkoziol | ||
| run: | | ||
| anaconda -t ${{ secrets.ADAMKOZIOL_ANACONDA_API_TOKEN }} upload -u adamkoziol $CONDA_BLD_PATH/noarch/allelefinder-*.tar.bz2 | ||
