Add functionality to set the fraction of HP detritus that is fast-sinking #412
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| name: cobalt CI | |
| # Controls when the workflow will run | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the "dev/cefi" branch | |
| push: | |
| branches: [ "dev/cefi" ] | |
| pull_request: | |
| branches: [ "dev/cefi" ] | |
| workflow_dispatch: | |
| env: | |
| BRANCH_NAME: main | |
| jobs: | |
| # This workflow contains a single job called "build" | |
| run-obgc_1d-ci: | |
| # The type of runner that the job will run on | |
| runs-on: ubuntu-latest | |
| # define container | |
| container: | |
| image: clouden90/1d_mom6_cobalt:withdata | |
| options: --user root | |
| # Steps represent a sequence of tasks that will be executed as part of the job | |
| steps: | |
| # Checks-out your repository under $GITHUB_WORKSPACE, so your job can access it | |
| - name: Checkout Repository | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: jitterbit/get-changed-files@v1 | |
| id: abc | |
| with: | |
| format: space-delimited | |
| token: ${{ secrets.GITHUB_TOKEN }} | |
| # git clone CEFI-regional-MOM6 and replace ocean_BGC | |
| - name: git clone CEFI-regional-MOM6 | |
| working-directory: ../ | |
| run: | | |
| pwd | |
| ls -l -h | |
| git clone -b $BRANCH_NAME https://github.com/NOAA-GFDL/CEFI-regional-MOM6.git --recursive | |
| rm -rf CEFI-regional-MOM6/src/ocean_BGC | |
| cp -r ocean_BGC CEFI-regional-MOM6/src | |
| cd CEFI-regional-MOM6/src/ocean_BGC && git branch | |
| - name: Copy 1D modelinput dataset | |
| working-directory: ../CEFI-regional-MOM6/exps | |
| run: | | |
| ln -fs /opt/datasets ./ | |
| ls -l -h ./datasets | |
| - name: Build mom6sis2-cobalt | |
| working-directory: ../CEFI-regional-MOM6/builds | |
| run: | | |
| echo "build mom6sis2..." | |
| ./linux-build.bash -m docker -p linux-gnu -t debug -f mom6sis2 | |
| ls -l -h build/docker-linux-gnu/ocean_ice/debug/MOM6SIS2 | |
| - name: Run 1D BATS case | |
| working-directory: ../CEFI-regional-MOM6/exps/OM4.single_column.COBALT | |
| run: | | |
| echo "Start 1D BATS case ..." | |
| pwd | |
| ./driver.sh | |
| cat ./RESTART_48hrs/ocean.stats | |
| - name: Check with ref | |
| working-directory: ../CEFI-regional-MOM6/exps/OM4.single_column.COBALT | |
| run: | | |
| echo "new 48 hrs ocean.stats: " | |
| cat ./RESTART_48hrs/ocean.stats | |
| echo "baseline 48 hrs ocean.stats: " | |
| cat ../../src/ocean_BGC/.github/ref/OM4.single_column.COBALT.p4/docker-linux-gnu/ocean.stats | |
| # | |
| diff -q ./RESTART_48hrs/ocean.stats ../../src/ocean_BGC/.github/ref/OM4.single_column.COBALT.p4/docker-linux-gnu/ocean.stats > /dev/null || { echo "Error: ocean.stats are different."; echo "Plz update ocean_BGC/.github/ref/OM4.single_column.COBALT.p4/docker-linux-gnu/ocean.stats with the following: "; cat ./RESTART_48hrs/ocean.stats; exit 1; } |