LightningCLI instantiator receives values applied by instantiation links to set in hparams

[mauvilsa]

What does this PR do?

Fixes save_hyperparameters when used through LightningCLI (feature introduced in #18105) so that target values of links applied for instantiation are included in hparams.

Fixes #20311
Fixes #20147

Also adds an official way to disable #18105 (parameter load_from_checkpoint_support), which might be desired by some people, e.g #20432, #20726

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📚 Documentation preview 📚: https://pytorch-lightning--20777.org.readthedocs.build/en/20777/

[mauvilsa]

I think the tests that fail is because the newer version of jsonargparse is not installed.

[Borda]

Please check the failing GPU stand-alone test:

TypeError: _InstantiatorFn.call() missing 1 required keyword-only argument: 'applied_instantiation_links'

[mauvilsa]

Please check the failing GPU stand-alone test:

TypeError: _InstantiatorFn.call() missing 1 required keyword-only argument: 'applied_instantiation_links'

Looking at the logs, in Install package & dependencies I see that jsonargparse v4.35.0 gets installed (e.g. here), even though the requirement is >=4.39.0, <4.40.0. I don't know how to figure out why this is happening.