fixing tests #39

	# This workflow will install Python dependencies, run tests and lint with a single version of Python
	# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions

	name: Unit testing

	on:
	workflow_dispatch:
	push:
	branches: [dev_alban, dev_thomas, master, pre_deploy_1.1]
	pull_request:
	branches: [dev_alban, dev_thomas, master, pre_deploy_1.1]

	jobs:
	build:
	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@v2
	- name: Set up Python 3.8
	uses: actions/setup-python@v2
	with:
	python-version: 3.8
	#----------------------------------------------
	# ----- install & configure conda
	#----------------------------------------------
	- uses: conda-incubator/setup-miniconda@v2
	with:
	python-version: 3.8
	conda-build-version: "*"
	channels: conda-forge,defaults
	channel-priority: true

	- shell: bash -l {0}
	run: \|
	conda info
	conda list
	conda config --show-sources
	conda config --show
	printenv \| sort

	- shell: bash -l {0}
	run: \|
	conda env update -n test --file environment.yml
	- name: Create mongoDB Docker container
	run: sudo docker run -d -p 27017:27017 mongo:latest

	#----------------------------------------------
	# run test suite
	#----------------------------------------------
	- name: Run tests
	shell: bash -l {0}
	run: \|
	conda info
	conda activate test
	coverage run --omit '.venv/*' -m pytest tests
	coverage report -m

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