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HullUni-bioinformatics

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  1. ReproPhylo ReproPhylo Public

    Reproducible Phylogenomics

    Jupyter Notebook 22 4

  2. TE-search-tools TE-search-tools Public

    Python wrappers for programs that search for transposable elements

    Jupyter Notebook 19 6

  3. metaBEAT metaBEAT Public

    Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool

    Python 19 3

  4. Nematoda-TE-Evolution Nematoda-TE-Evolution Public

    Analysis for the paper "Genetic drift, not life history or RNAi, determine long term evolution of transposable elements"

    Jupyter Notebook 8 5

  5. Haenfling_et_al_2016 Haenfling_et_al_2016 Public

    Data processing workflow and supplementary data for Haenfling et al. 2016 - Environmental DNA metabarcoding of lake fish communities reflects long-term data from established survey methods

    R 6 5

  6. genomisc-training genomisc-training Public

    Miscellaneous materials (tutorials, exercises, testdata) to develop essential 'survival'-skills in bioinformatics.

    5 1

Repositories

Showing 10 of 31 repositories
  • Harper_et_al_2020_mustelid_diet_metabarcoding Public
    R 1 0 0 0 Updated Nov 20, 2020
  • Harper_et_al_2018_mammal_eDNA_metabarcoding Public
    R 0 1 0 0 Updated Oct 21, 2020
  • Harper_et_al_2018 Public
    Jupyter Notebook 2 1 1 0 Updated Oct 21, 2020
  • Harper_et_al_2020_crucian_carp_impact_invertebrates_conventional_molecular_tools Public
    R 1 1 0 0 Updated Oct 21, 2020
  • Griffiths_et_al_2020_Fens_eDNA Public

    Data processing workflow and supplementary info for: Griffiths et al. (2020) - Environmental DNA metabarcoding provides enhanced detection of the European eel Anguilla anguilla and fish community structure in pumped river catchments

    R 2 0 0 0 Updated Jul 19, 2020
  • Curated_reference_databases Public

    This repository contains the complete description of how we produced the curated reference databases for the studies in Evolutionary and Environmental Genomics Group (@EvoHull)

    HTML 2 2 0 0 Updated Jun 27, 2019
  • Li_et_al_2019_eDNA_dynamic Public

    Data processing workflow and supplementary data for Li et al. 2019 - Limited dispersion and quick degradation of environmental DNA in fish ponds inferred by metabarcoding

    R 0 0 0 0 Updated Jun 27, 2019
  • Handley_et_al_2019 Public

    Data processing workflow and supplementary data for Handley et al. 2019 - Temporal and spatial variation in distribution of fish environmental DNA in England’s largest lake

    Jupyter Notebook 1 0 1 0 Updated Jun 5, 2019
  • Li_et_al_2019_eDNA_fish_monitoring Public

    Data processing workflow and supplementary data for Li et al. 2019 - Ground-truthing of a fish-based environmental DNA metabarcoding method for assessing the quality of lakes

    R 3 0 0 0 Updated Jun 5, 2019
  • metaBEAT Public

    Metabarcoding analyses pipeline - metaBarcoding and Environmental DNA Analysis Tool

    Python 19 3 2 1 Updated Apr 17, 2019
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