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Add docs on how we analyze each pathogen - especially influenza #590

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anna-parker opened this issue Feb 27, 2025 · 2 comments
Open

Add docs on how we analyze each pathogen - especially influenza #590

anna-parker opened this issue Feb 27, 2025 · 2 comments
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documentation Improvements or additions to documentation

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@anna-parker
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anna-parker commented Feb 27, 2025

It would be good to have docs somewhere on how we align and analyze each pathogen. e.g. which nextclade dataset we use, how we group segments in influenza vs CCHF, how we annotate mutations of interest, which reference we use etc.

I added a question as I am not quite sure where this page should be added. It might also be nice to add a short description of the pathogen, e.g. how many segments, if it is linear, short description of the genes...

@anna-parker anna-parker added documentation Improvements or additions to documentation question Further information is requested labels Feb 27, 2025
@fengelniederhammer
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Let's add a page for every organism on the dashboards that documents how we processed the data. The page should be displayed when clicking the organism in the menus (i.e. not on "single variant", but on the organism name). The breadcrumb menu should also link there when clicking on the organism.

@fengelniederhammer fengelniederhammer removed the question Further information is requested label Mar 4, 2025
@fengelniederhammer
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First step: Implement this page for every organism. Leave it blank (i.e. not documentation), only add links to the individual views.

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