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Issues list

Rename the query option materializationCutoff
#784 opened May 28, 2025 by Taepper
Ensure arrow batch size is not too large after an orderBy
#783 opened May 28, 2025 by Taepper
Validate that arrow batches are emitted sequentially
#782 opened May 28, 2025 by Taepper
Support phylogenetic tree queries in SILO epic Collection of multiple issues for a larger feature
#778 opened May 28, 2025 by anna-parker
5 tasks
SILO crashes on FastaAligned with InsertionContains filter bug Something isn't working
#777 opened May 27, 2025 by fengelniederhammer
1
@Taepper
1
Merge /include and /src
#771 opened May 21, 2025 by Taepper
1
Migrate Insertions action to new framework
#770 opened May 21, 2025 by Taepper
Migrate Mutations action to new framework
#769 opened May 21, 2025 by Taepper
Migrate Aggregated action to new framework
#768 opened May 21, 2025 by Taepper
Migrate Fasta action to new framework
#767 opened May 21, 2025 by Taepper
Migrate Details action to new framework
#766 opened May 21, 2025 by Taepper
Add Arrow as alternative output format to ndjson
#764 opened May 14, 2025 by Taepper
1
Leave sequences compressed in the query engine
#763 opened May 14, 2025 by Taepper
1
@Taepper
Confusing error when requesting 4k sequences: "Error from SILO: limit not supported for streaming endpoints when returning more than 10000 rows, but got 9337956"
#760 opened May 3, 2025 by corneliusroemer
@Taepper
1
Benchmarking: why has sorting had such a large impact?
#759 opened Apr 30, 2025 by pflanze
@pflanze
1
Migrate legacy query engine features
#758 opened Apr 23, 2025 by Taepper
Benchmarking: submit the current probes and docs how to apply the probes to older versions and add the C++ part of evobench
#757 opened Apr 23, 2025 by chaoran-chen
1
@pflanze
3
Benchmarking: provide a "make bench" script
#756 opened Apr 23, 2025 by chaoran-chen
@pflanze
4
Benchmarking: check/subtract cost of flushing
#753 opened Apr 23, 2025 by chaoran-chen
1
SILO does not error when insertion contains illegal symbol but is shorter than 3 characters bug Something isn't working
#747 opened Apr 17, 2025 by Taepper
1
Measure impact of deprecated dateToSortBy
#745 opened Apr 16, 2025 by Taepper
@pflanze
Better abstractions for shared column metadata
#744 opened Apr 15, 2025 by Taepper
Return more representative size estimates in the DatabaseInfo
#743 opened Apr 15, 2025 by Taepper
Problems with the current ndjson input format
#741 opened Apr 14, 2025 by Taepper
Cache database info
#740 opened Apr 14, 2025 by Taepper
ProTip! What’s not been updated in a month: updated:<2025-04-30.